Brassica napus (rape): 106346353
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Entry
106346353 CDS
T04128
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
bna
Brassica napus (rape)
Pathway
bna04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106346353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106346353
Membrane trafficking [BR:
bna04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
106346353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
zf_RING_Vps8
WD40_Prp19
Beta-prop_EML_2
WDR55
Beta-prop_HPS5
zf-RING_2
PEP5_VPS11_N
zf_RING_Vps8_fungal
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR11_2nd
EIF3I
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
106346353
NCBI-ProteinID:
XP_013641106
LinkDB
All DBs
Position
A6:3196146..3201923
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AA seq
972 aa
AA seq
DB search
MASLPSENGVDGDDEREEEEEDEEEEEEEENGEEEGEEEPRLKYQRMGGNVPSLLSNDAA
SCIAVAARMIALGTHDGTVHILDFLGNQVKEFRAHTAPVNDLSFDTEGEYIGSCSDDGSV
VINSLFTDDEKLRFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGYKDQV
LHSGEGPIHSVKWRGSLIAWANDTGVKVYDTAKDQRVTFIERPRGSPRPEALLPHLVWQD
DTLLVIGWGTSVKIASIKSDQQKPAYGTYRQVQMSSLNQVDIVASFQTSYFISGIAPFGD
SLVILAYIPTEEDGVKEISSTTTLSRQGNAQRPEVRIVSWNSDELTMDALPVHGFEHYKA
KDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEKA
LAAVEAGEGRNELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLR
QLPVLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSTVKSWPRSVYSALPVISAIE
PQLNTSSMTDALKEALAELYVIDGQHEKAFALYADLLKPEVFDFIEKYNLHEAIRGKVVQ
VMLLDCKRATALFIQNRDLIAPSEVVPQLLKAGKKCDSRYYLYLYLHALFQVSPDGGKDY
HDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDLLREQVFVLGRMGNAKQALAV
IINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVPN
GLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSNEEDDS
RGKREDNDRSISQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCHA
YHMTCLMDAAFSDSNNKTAAKGSSGYGYGYDNGVEEEDSEDDEEDDSNDGDRSVRSRLRC
ILCTTAAAASAR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgctcccgtctgaaaacggcgttgacggagatgacgaaagggaggaggaggag
gaagatgaagaagaagaagaggaagaagaaaacggagaagaagagggcgaggaggagccg
cgtctcaagtaccagcgtatgggcggaaacgtaccttccttgctatccaacgacgctgct
tcctgcatcgccgttgccgcgaggatgatcgctctcggtactcacgacggaacggttcac
atcctcgatttcctcgggaatcaggtgaaagagtttcgggcgcacacggccccggttaat
gatctaagctttgacactgagggagagtatatcggaagctgttcagacgatggctctgtt
gttataaacagccttttcactgatgacgagaagttgaggtttgattaccatcgccccatg
aaggctatttccttggatccggattacaccaagaagcagtcgaagagatttgtagctggt
ggtttggctggtcatttgtatatgaactcgaagaagtggtttggttataaagatcaggtg
ctgcattctggggaaggtccaatccattctgtgaaatggagaggaagtctcatcgcctgg
gctaatgatactggtgttaaagtttatgatacagccaaagatcagcgtgttacttttatt
gaaagacctcgaggaagcccccggcctgaggctttgcttccccacttggtttggcaggat
gacactcttcttgtgattggttggggaacatctgttaaaattgcttcaattaaatcagac
cagcaaaaaccagcatatggaacatataggcaggttcagatgtctagtctaaaccaagtg
gacattgtggcatcgttccaaactagctatttcatttcagggattgctccctttggtgat
tctctagttattcttgcatatatacccaccgaagaagatggtgtgaaagaaattagcagc
accactactctatctcgtcagggaaatgcccagaggcctgaagtacgcattgtatcatgg
aacagtgatgaacttacaatggatgctcttccggtacatggatttgagcattacaaggcg
aaagactattcccttgctcatgctccattcccaggtagtagctatgctggggggcagtgg
gcggctggtgatgaaccactgtactatatcgtgtctccaaaggatgttgtgattgcaaaa
cccagggatgctgaagatcacattaactggcttttgcaacatggattccacgagaaagca
ctagcagctgttgaggctggtgaaggacgaaacgaactaattgataaggtgggtgctggg
tatcttgatcatttgattgtggaaagaaaatatgctgaagcagcatctttgtgcccaaaa
ttgttacgaggatctgcttcagcctgggagaggtgggttttccattttgctcaattacgc
cagctgcctgtgcttgttccatacatgcctaccgataacccaaggctcaaggatactgtc
tacgaggttgctctagtggcactggcaacaaacccctcataccataaggagcttttgtcc
actgttaaatcttggccacgttcagtatattctgctttgcctgttatctcagcaatagag
cctcagctgaacacatcttcaatgaccgatgccctcaaagaggcgctggcagagctgtat
gttattgatggacagcacgagaaagccttcgccctatatgctgatcttctcaaaccagaa
gtgttcgacttcattgagaaatacaacttgcatgaggcgattcgtggaaaggttgtccag
gtaatgctgcttgattgcaagcgtgccactgccttgtttatccaaaacagggatttgatt
gctccatctgaagtggtcccacaacttttgaaagctggcaagaaatgtgattcaagatat
tacttgtacttatatctgcatgcgttatttcaagtcagtccagatggtgggaaggattat
catgatatgcaggtagaactatatgcggaatacgatactaaaatgctgcttccattccta
cgtagcagtcaacattacaagttagaaaaggcatatgaactttgtgtcaagaaagatcta
ctaagagagcaagtttttgttctgggaaggatgggaaatgcaaaacaagctcttgctgtc
atcataaataaactgggggatatagaggaggctgtggaatttgtgtccatgcagcacgac
gatgatctctgggaagaactgataaaacaatgtctgaacaagcccgagatggtgggcttg
ctgttggagcacacggttggcaaccttgaccctctttacatagtcaatatggttccaaat
ggcttggaaatacctcgattaagggatcgattggtcaaaatcgtgacagattacagaacc
gagacatctctaagacacggttgtaatgacattctcaagacggacattgtgaatcttctg
gtcaagtgcttcaacgaggcgagacgtggggtctgcctaagcaacgaagaagacgattcc
cgtggaaagagagaagacaacgatcgatcgatctcacagagaatggtagtagataaatca
ttgagcattaagatgacagaggtgaagtcgaagacgcggggggacacacgttgttgcatg
tgcttcgacccggtatcgataagaggggacacggtggtggtcttcttttgctgtcatgct
taccacatgacatgtctcatggatgctgccttcagcgacagcaacaacaagacagcagct
aaaggttcttccgggtatggatacggctatgataacggtgtggaggaggaagatagtgag
gatgatgaagaagatgatagtaatgatggagacaggtctgtcaggtcgcgattgcggtgc
atattatgtactactgccgctgctgcgtccgctcggtag
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