KEGG   Brassica napus (rape): 106346356
Entry
106346356         CDS       T04128                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bna  Brassica napus (rape)
Pathway
bna03030  DNA replication
bna03410  Base excision repair
bna03420  Nucleotide excision repair
bna03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106346356
   03410 Base excision repair
    106346356
   03420 Nucleotide excision repair
    106346356
   03430 Mismatch repair
    106346356
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bna03032]
    106346356
   03400 DNA repair and recombination proteins [BR:bna03400]
    106346356
Enzymes [BR:bna01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106346356
    6.5.1.6  DNA ligase (ATP or NAD+)
     106346356
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106346356
DNA replication proteins [BR:bna03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    106346356
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     106346356
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106346356
   NER (nucleotide excision repair)
    Other NER factors
     106346356
   MMR (mismatch excision repair)
    Other MMR factors
     106346356
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 106346356
NCBI-ProteinID: XP_013641109
LinkDB
Position
A6:complement(3170160..3174433)
AA seq 772 aa
MLTIRSSNHFRCISSLFTKTLNPNFSSVSLSFTRPAPHRAMSSSRPSAFDALMSNARASA
AKKKTPQASNPPRSPNKRKIEKTQDSDLVKTEASDSAKPGSDSPSIAEDSKKCAKKSRSL
TQTDKIEEMKSKIASLKKKPGEFDPERVSCWEKGERVPFLFIALAFDLISAESGRIVITD
ILCNMLRTVIATTPDDLVATVYLAANEIAPAHEGVELGIGEGSIIKAISEAFGRTESQVK
KLNTELGDLGLVAKGSRSSQTMMFKPESLTVVKVFNTFRQIAKESGKDSTEKKKDRMKAL
LVAATDCEPLYLTRLLQAKLRLGFSNQTVLAALGQAAVYNEEHSKPPPSTKSPLEEAAKI
VKQVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVGEILNKFQDTV
FTCEYKYDGERAQVHCMEDGTFEIYSRNAERNTGKYPDVSLALSRLKKPSVKSFILDCEV
VAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLNIRREKL
YESFEEDPGYFQFATTLTSSDIDEIQKFLDASVDIGCEGLIIKTLNSDATYEPAKRSNNW
LKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVFGAFLLACYDADKEEFQSICKIGTGFSE
AVLEERSTSLRSRVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIV
DPDKGISLRFPRLLRVREDKKPEEATSSEQIADMYQAQKHNHPSNDAKGEDD
NT seq 2319 nt   +upstreamnt  +downstreamnt
atgttaacgattcgatcatcgaatcacttccgatgcatatcttccctcttcactaaaacc
ctaaaccccaacttctcctccgtctcgctctcctttacccgcccagctccccacagagcc
atgtcttcttcacgcccctccgcattcgacgctctcatgtccaacgctcgcgcatccgcc
gccaagaagaagaccccccaagcctccaacccgcctcgctcgccgaacaagaggaaaatc
gaaaaaacccaagactccgatttggtcaagaccgaagcttccgattccgcgaaacccgga
tcggattcaccttcaattgcggaggattcgaagaagtgtgcgaaaaagtctaggtctttg
acccagacggataagatcgaggaaatgaagagcaaaatcgcgtcgctgaagaagaagccc
ggcgagttcgatccggagagagtgtcgtgttgggagaaaggggagagagttccgtttctt
tttatcgcgttggcgtttgatttgatctcagcggaaagtgggaggattgtgattactgat
attttatgtaatatgctgagaaccgttattgccactactcctgatgatttggtggctact
gtttaccttgcggcgaacgagatcgctcctgcgcatgaaggggttgagttggggattggt
gaagggtctattatcaaggccatctctgaagcttttggtagaacggagtctcaggttaag
aagctaaacacggagcttggagacttggggcttgtagctaaaggaagccgttcgtctcag
actatgatgttcaagccagagtcattgactgttgtcaaggttttcaacacgtttcgacaa
attgctaaggaaagtggaaaagatagtacagaaaagaagaaggatcgaatgaaggcactc
cttgtggcagcaacagactgtgaacctctttacttgactcgtttacttcaggcaaaattg
cggttagggttctcaaaccagaccgtcttagctgccttgggacaagcagctgtatataat
gaagagcactctaagccaccccctagtactaagtctcctttagaagaggctgcgaagatt
gttaaacaagtattcactgtgcttcctgtctatgacattattgtccccgctcttttatct
ggtggtgtgtggaatctccctaaaacttgtaactttacactcggtgttccaatcggacca
atgcttgcaaaaccaacaaaaggtgtaggtgagatactgaataaattccaagacaccgtc
ttcacatgcgagtacaagtatgatggagaacgtgcacaggtacattgtatggaggatggt
acattcgagatatatagtcgaaatgccgaaagaaacactgggaagtaccctgatgtttct
cttgcgttgtcaagattaaagaagccttctgtgaaatcttttattctggattgtgaggtt
gttgctttcgacagggagaaaaagaaaattcttccatttcagatattgagcactcgagcc
cgtaaaaatgtgaatgtcaatgatatcaaagttggcgtatgcatctttgcttttgacatg
ttatatcttaatggccagcaacttatccaggagaatcttaatattcgccgagagaagcta
tacgaatcatttgaggaagatcctggatatttccagtttgcgacaactcttacatccagc
gatattgatgaaatacaaaagtttcttgatgcgtccgtagatattggctgtgaagggttg
atcattaaaacattgaattcagatgctacctatgagcctgcaaagcgatcaaataattgg
ctaaaactgaagaaagactacatggacagtattggggactctgtggatcttgtaccaatt
gctgctttccatggacgtggcaaacgcacaggtgtctttggtgcatttttactagcttgc
tacgatgctgataaggaagagtttcaaagcatttgtaaaataggtactggattttctgaa
gctgtacttgaagagcggtctaccagtcttcgctctagagtgattgctactccaaaacaa
tactaccgagttggagacagcctcaatccagacgtttggttcgaacccactgaggtctgg
gaagtaaaggcagctgacttgacaattagccctgtacatcgtgcagctaccggcattgtg
gaccctgataagggaatttctctacgttttccccgtttgctacgtgtacgggaagacaag
aagccagaggaggcaacatcatctgagcagattgctgatatgtaccaagctcagaaacac
aaccatccgagcaatgatgccaaaggtgaagacgattga

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