Brassica napus (rape): 106346976
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Entry
106346976 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106346976
03009 Ribosome biogenesis [BR:
bna03009
]
106346976
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106346976
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106346976
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106346976
Pre-60S particles
106346976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
106346976
NCBI-ProteinID:
XP_013641914
UniProt:
A0ABQ8EP27
A0A078FVV5
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All DBs
Position
A1:24694133..24697994
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AA seq
568 aa
AA seq
DB search
MVELEKNSSGELKKRIRKRNRGKKNELQKVQVETHNVEENADEIKKKLKKVKKLQERGET
DEDVEAKEKEEEVEDKMVVVAKGIMTNETFESLDLSEQTFEAIKAMDFKHMTQIQAGSIP
PLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVA
EELVKHHSLTVSMVIGGNNRRSEAQRLANGSNLLIATPGRLLDHLQHTKGFIFKHLKCLV
IDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVQDLARVSLTSPVLVDVDDGR
RKVTNEGLEQGYCVVPSEKRLLLLISFLKKNLNKKIMVFFSTCKSVQFHAEIMKLINVDS
CDIHGGLDQNRRTKTFFDFMKAEKGILLCTDVAARGLDIPAVDWIIQYDPPDKPTEYIHR
VGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKELEFNEKKLLNVRSALEKYVAND
YNLNKIAKEAYRAYIAAYNSHSLKDIFNVHRLDLQAVALSFCFSSPPKVHLNIESGAGKV
RKARNQQGRNGFSPYTPYGKGKATPKEA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggttgagctggagaagaactccagtggagagctgaagaagaggatcagaaagcgaaac
cgtgggaagaagaacgagcttcaaaaggtgcaagtagaaacccataacgttgaggaaaac
gctgatgaaatcaaaaagaagcttaagaaagtaaagaagctgcaggagagaggcgaaact
gatgaagacgtggaagcaaaggaaaaggaagaggaagtagaagacaagatggtggttgtg
gcgaaagggataatgactaacgagacttttgaatcccttgacttgtcagagcagaccttc
gaagctatcaaggccatggactttaagcacatgactcaaattcaagctggatcaattcct
cctcttttggagggcaaagatgttcttggtgctgccaggactggttctggtaaaaccctt
gcttttctcattccggctgttgagttgctctttaaagagcgtttctctcctcgcaacggg
actggtgtcatcgttatttgccccacaagagaacttgctattcagactaaaaatgtggcg
gaggagctagtgaagcatcattcacttactgtcagtatggttattggtggaaataacaga
aggtcggaagcacaacgtcttgcgaatggttcaaatttgctgatagcaactcctgggcgt
cttcttgaccatcttcaacataccaagggtttcatttttaaacacctaaagtgccttgtg
attgatgaagctgataggattctggaagaaaattttgaggaggacatgaataagattcta
aaaattctaccaaagactaggcaaaccgcactattctctgccacccagacttcgaaggtt
caagatcttgctcgagtgtcattgacgtctcctgttcttgttgatgtcgatgatggtaga
cgcaaggtgacaaatgaaggattggagcaaggctattgcgttgttccgagcgaaaagaga
cttctccttctaatttcttttctgaagaagaacctaaacaagaaaataatggtgttcttc
tctacgtgcaagtcggtacagttccatgccgaaatcatgaagctaatcaacgtggatagc
tgtgacatccatggaggattggatcagaacagaagaactaaaacttttttcgactttatg
aaagcagagaaaggtattttgttgtgcactgatgttgctgctcgtggtctcgacattcct
gccgtggactggattatacaatatgatcctccagacaagccaacggaatatatccacagg
gttggtcgaacagcccgtggagaaggagcaaagggaaaagcattgcttgtcttgatccct
gaagagcttcaatttattcgttaccttaaggctgcaaaagtacctgtaaaagagcttgag
ttcaatgagaagaagcttttgaatgttcgatccgctctggagaaatatgttgccaacgac
tataatctgaacaagatagccaaggaagcgtacagggcttatatcgcagcatacaattca
cattctctgaaagatatctttaatgttcaccggctagatcttcaggcggttgctctatcc
ttctgcttctcttcgccgccaaaagtgcatctgaacatagaaagtggagctggaaaggtg
aggaaggcgaggaatcagcaaggtcgcaatggcttctctccttacactccctatggcaaa
ggcaaggccacacccaaagaggcatga
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