Brassica napus (rape): 106347379
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Entry
106347379 CDS
T04128
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bna
Brassica napus (rape)
Pathway
bna03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106347379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106347379
03036 Chromosome and associated proteins [BR:
bna03036
]
106347379
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106347379
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106347379
PBAF complex
106347379
GBAF(ncBAF) complex
106347379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF7685
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
106347379
NCBI-ProteinID:
XP_013642360
LinkDB
All DBs
Position
A6:complement(9501973..9505675)
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AA seq
773 aa
AA seq
DB search
MPASEDRRGKWKRRKRGGRRPKQEDEDMEEEDEDNNNEEMEDADNADELHQNGGATPDPG
PGVNEVVEDSGTRVSDFPSVVRRVVIRPHASVTAVVAAERAGLIGESRGQGSLPSLENIS
YGQLQALSTVPADSVSLDTERSDGASSAYVISPPLIMEGEGVVKRFGDKVHVLPMHSDWF
APNTVDRLERQVVPQFFSGKSPNHTPESYMQFRNAIVSKYTDNPEKTLTISDCQGLVDGV
EDEDFARVFRFLDHWGIINYCATSQCHPEPSMDVSDVREDSNGEVHVPSAALTSIESLIK
FDKPICGHKSDSSVSCSDVDLPDLDIRIREHLCDNHCNHCSRPLPTVYFQSQKKEDVLLC
SDCFHHARFVAGHSCIDFVKVDTTKDYRDQDGENWSDQETLLLLEAVELYNENWVQIADH
VGSKSKAQCILHFLRLPVEDGLLDNVELPGVTDPVNPTNGFDNKGTVSNGALPGSSEQES
ETEINLPFVKSPNPVMALVAFLASAVGPRVASSCAHESLMVLSADDRSKSEGKDPSLIDE
TTCQNGAEAPTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRME
LKLKQFAEIETLLMKECEQVEKTRQRFAAERARMVSARFGSPGQTSNTNNLQGMSLSTGG
GNNVNTLLQQQQQQGSASSSQPSIIPGFSNNPQLHAQMQFMARQQQQQQAFSFGPRLPLN
AIQTNAGSTPSLFGNNQLNNNPAGAASINQPPFSHPMVRSSTGSASGSGLGLN
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctgaagatagaagagggaaatggaaacggcggaagcgaggtgggaggaga
ccgaagcaagaggacgaagacatggaggaagaagacgaggacaacaacaacgaggagatg
gaggatgctgataatgccgatgagcttcaccaaaacggcggcgcaacacccgatccggga
cccggtgttaacgaggtagttgaagattccggtactcgcgtctctgatttcccctcagtg
gttaggcgcgtggtgatccggccacacgcctctgtaacagctgttgtggcggctgagaga
gctggtttgattggggagagtagagggcaaggctcgcttccatctctggagaatatttcg
tatgggcagttacaggcgttgtctactgtgccagctgattctgtgtcgcttgatactgag
aggagtgatggagcgtcttctgcttatgttatctctccacctcttattatggaaggagaa
ggagttgttaaacggtttggggataaggttcatgtcttgcctatgcattcagattggttt
gcaccaaacacagtggatcggcttgaaaggcaagttgtgccacagttcttctccggaaaa
tctccaaatcatacaccagaaagttatatgcaattcaggaatgctattgtctcaaaatac
acggataaccctgaaaagacactgacgatatctgattgccaaggattggtagatggtgtc
gaagatgaagattttgcacgagtgttccgttttcttgatcactggggcattatcaattac
tgcgccacttcccagtgccatcctgagccttctatggatgtatcagatgttagggaggat
tcaaacggtgaagtccatgtgccatctgctgcgttaacatctattgagagtttgatcaaa
tttgacaagcccatctgtggacacaagtcagattcatccgtgtcatgttcggatgttgac
ctccctgacttggacataagaattcgtgaacacctatgcgataaccattgcaaccattgt
tctcgaccgctcccaactgtgtacttccaatcacaaaagaaggaggatgtacttttatgc
tctgattgttttcaccatgcaagatttgttgctggacattcttgtattgactttgtaaag
gtggatacaaccaaagattacagagatcaagatggagagaattggagtgatcaagaaaca
ctcttgcttcttgaagctgtggaactctacaatgaaaactgggttcagattgcagaccat
gttggttcaaaatcaaaagctcaatgcattcttcattttcttcgattacctgtggaggat
ggtcttttagataacgttgagcttccaggtgtaactgatccggtaaaccctacaaatgga
tttgacaacaaaggaacagtttcaaatggggctttaccaggttcttctgagcaagaatcc
gaaactgagatcaatcttcctttcgtgaagtctcctaatccggttatggcattggtagca
tttttggcatcagctgttggacctagagttgcttcgtcctgtgcccatgagtccctcatg
gttttatccgcggatgataggtccaaatctgaaggaaaagatcccagcttgattgatgaa
acaacatgccaaaacggagcggaagcaccgactcctttgccacaggacaaggttatggca
gcatttagagccggtctatcagctgcagcaacaaaagcaaagttgtttgctgatcatgag
gaacgtgaaatccaaaggctttctgcaaatatcgtaaatcaccagctgaagaggatggag
ctgaagctaaagcagtttgcagaaatcgaaacgttgttgatgaaagaatgcgaacaagtg
gagaaaacacgtcagagatttgctgcagaacgagcacgtatggtctcagcaagatttgga
tcacctggacagactagtaacactaataatctccaagggatgtctctatccactggtggt
ggtaacaacgtcaatactctcctccagcaacaacagcagcaaggttcagcttcctcatct
caaccaagcatcatcccaggattcagcaacaacccgcaacttcatgcgcagatgcagttc
atggcacgccaacaacaacaacagcaagcattctccttcggcccgagattgcctctcaat
gcgatacagaccaatgcaggatcaaccccttcactgtttggcaacaaccaacttaataat
aaccctgcaggtgcagcatccatcaaccaacctccctttagtcacccgatggttaggtct
tccactggttctgcctccggatccggcttaggcttaaactaa
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