Brassica napus (rape): 106347511
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Entry
106347511 CDS
T04128
Name
(RefSeq) uncharacterized protein DDB_G0283357
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106347511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
106347511
03019 Messenger RNA biogenesis [BR:
bna03019
]
106347511
04121 Ubiquitin system [BR:
bna04121
]
106347511
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106347511
Transcription factors [BR:
bna03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
106347511
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106347511
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106347511
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106347511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
PcfJ
RRM_Nup35
zf-UDP
Nup35_RRM_2
FYVE
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
106347511
NCBI-ProteinID:
XP_013642524
LinkDB
All DBs
Position
A6:12131759..12136541
Genome browser
AA seq
903 aa
AA seq
DB search
MSDYGEKTCPLCAEEMDLTDQQLNPCKCGYQICVWCWHHIIDMAEKDQSEGRCPACRTPY
DKEKIVGMTVDPERLNSEGNMDRKKTQKSKLKPSEGRKQLANVRVVQRNLVYIVGLPIEL
ADEDILQRKDYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYAKEEEAVRCIQSVHG
FILDGKGLKGCFGTTKYCHAWLRNVACNNPDCLYLHEVGSQEDSFTKDEIIPAHTRVQQI
TGATNTPQNRSGSVLPPPLDAYCSDSSTAKPIEKVPSITVTAAPSGSSVRSTALPAAASW
GTRITNQQSLAASNGSLDNHRSTSENGTLAKPTAKAAHSHVSTSNTLQKPPHKEESRTLA
QKSKPGMSKPSQNNIAVDPGSKRTVSPNRDPSSNQVSCIVESSYDSRVVEEPSAVENSFD
STNEIAEDVPNVSNLAAEVAWMGITTNAKDEDPGVPVASGAYCDQGSIRQPGNNVPDLEQ
CRNNPPTNTGAEADVSQNRIPGSSGEWDWRSDLQSQVQVNSALEVDGLSSINSSRRDVQA
VSHSTNRCTPSSSILDSVHTASRPFQTRETSGGFDSHTGPSFEIGSDRVHHPNGFSETSR
SGSSMQHSLFANTEGRNNIQSAENDIISNILDFDPWDESLTMPPNFAKLLGQSDHWGSSL
EQSNLLKQRNDQSRFSFARHEESNNQAYDNNNNNNNNTYSIYGQLSRGQPIQEFGENRDI
YHDKFGSQNGFASNYSGGYEQFAASPGFSSYKSPAVRSQVSAPPGFPAPSKLPPPGFPSH
ERANMSSDFVSGTRLHDSSSSVLRNSYHVPPPSSNLNTAGDIEFIDPAILAVGRGRIQNG
METGAEFDMRSGFYSQLNSFEKEARLHQLLAQRSQAAQQQQVNANNFTPSVSDHYFLLNK
QWP
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgagtgactacggtgagaagacttgccctttgtgtgcagaggagatggatctcactgac
cagcaattgaatccttgcaaatgtggctatcagatttgtgtttggtgttggcatcacata
atcgacatggccgagaaagatcaatcagaagggcgttgtcctgcttgccgcactccctat
gacaaggaaaaaattgtcgggatgactgttgatcccgagagactgaactctgaagggaac
atggatcgcaaaaagacacagaagtcaaaattgaaaccttctgaaggcagaaagcaacta
gccaatgtccgagtggttcaaagaaatcttgtttacattgtcgggttgcccattgaacta
gcagatgaagatatcctccagcgtaaagactattttggtcagtatggaaaggttcttaag
gtttccatgtccaggacagcaacgggtctcatccaacagttccctaacaacacatgtagt
gtatatatcacttatgctaaagaggaagaggctgtcagatgcattcagtctgttcatggg
tttatcttggatggtaaaggactgaagggatgttttgggacaaccaagtattgtcatgcg
tggttaagaaatgtggcatgcaacaatcctgactgcctctatttgcatgaggttggttcc
caagaggatagttttacaaaagatgagatcatacctgcccatacaagagttcagcaaatc
actggagcaacaaatactccgcaaaaccgttcagggagcgtgctacctccaccattggat
gcttattgcagtgacagttctactgcaaaaccaattgaaaaagttccttctattactgtc
actgcagcacctagtgggagctctgttagatctactgctcttcctgctgcagcatcatgg
gggactcgtataacaaatcagcaatctttggctgcgtcaaatggatctttggacaatcat
agatctacatcggagaatggaactttggctaagcctactgcaaaggcagctcattcgcat
gtatccactagtaacactcttcagaaaccacctcataaggaagaaagtcgaacattggct
cagaaaagcaaaccgggtatgtcgaagccttcgcagaataatattgcagttgatcctggg
tccaagagaactgtatcacctaatagagatccgagtagtaatcaagtatcctgtatagta
gaatcttcctacgatagcagagtcgtcgaggagccttcagctgttgagaattcttttgat
agtacaaatgaaatcgctgaagatgtacctaatgttagtaacttggcggctgaggttgca
tggatggggataactacaaatgctaaagatgaagaccctggtgttccagtggcttccggt
gcttattgtgatcaaggttctattagacaacctggtaacaatgtaccagatcttgagcag
tgcagaaacaatcctcctacaaacactggtgcagaagctgacgtatcacagaataggatt
cctggttcaagtggagagtgggattggagatcagatttgcaatcccaggtgcaagtcaac
tcagcgttggaagtggatggtctatcatcaatcaatagtagtaggcgtgatgtacaggct
gttagccactccactaataggtgtactccatcaagttccatcctggattcagttcatact
gcttctcgtcctttccagaccagggaaacttctggtggatttgattcacatacagggccc
tcctttgaaataggtagcgatagagtgcatcatccaaatggattttctgagacttccaga
tccggttccagtatgcagcattctctatttgctaatactgaaggcaggaacaacattcag
agtgcagagaatgatataatttcaaacattttggactttgacccctgggatgaatccttg
actatgccacccaattttgcaaagttacttggccagagtgatcattggggcagttctctg
gaacagtctaaccttctaaagcagcgtaatgaccagtccagattctcttttgctcggcat
gaagaatcaaataatcaagcatatgacaataataataataataataataatacctacagc
atatatgggcagttgtcaagaggtcagcctatccaggagtttggagagaatcgggatatc
tatcatgataagtttgggagtcaaaatggttttgcttctaattattctggtggatatgaa
cagtttgctgctagtcctggattctcttcttacaaaagtcctgctgtgaggtcccaagtt
tctgctcctcctggatttcctgctcccagcaaattacctcctcctggtttcccttcacat
gaaagagcgaacatgtcttctgatttcgtttcaggaactcgtttgcatgactcgtcgtcc
tctgtgttaaggaactcgtatcatgtaccacctccaagtagcaatttgaatactgcagga
gacatagagtttattgatccagcaattttagcggttggaagaggaagaatccagaatggg
atggaaactggagcagagtttgatatgagatcaggtttctattctcagctaaattccttt
gagaaggaggcaagacttcatcagttgttggcgcagaggtctcaggctgcacaacaacaa
caagtcaatgctaacaactttactccttcagtctcagatcattattttttactaaacaaa
caatggccttag
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