Brassica napus (rape): 106348726
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Entry
106348726 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 3, chloroplastic
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106348726
03036 Chromosome and associated proteins [BR:
bna03036
]
106348726
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106348726
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
106348726
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106348726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
zf-CCHC
CMS1
AAA_19
YgbB
ERCC3_RAD25_C
zf-CCHC_4
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106348726
NCBI-ProteinID:
XP_013643980
LinkDB
All DBs
Position
C7:42978326..42981924
Genome browser
AA seq
748 aa
AA seq
DB search
MASTVGVPSLYQVPHLEFSKTTSKKRSTCLPLSLNKPFLSPFSLRRPRLIHTSSSSLLIP
SAVATPNSVLSEEAFKSLGLSDEFDNTDPSPSDDDGEELAISKLGLPQRLGESLEKRGIT
HLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEQAGDYSAFRRPGRLAKF
LVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQNALTRGVDVVVGTPGRIIDLI
EGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPQKRQSMLFSATMPTWVKKLARK
YLDNPLNIDLVGDQDEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRD
ADEVSLALSNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVI
HYELPNDPETFVHRSGRTGRAGKEGSAILMHSSSQKRTVRSLERDVGCRFEFISPPTVGD
LLEASADHVVATLNGVHPESIKFFSATAQKLFEEKGTDALAAALAHLSGFSQPPSSRSLL
SHEQGWVTLQLIRDPTNARGFLSARSVTGFLSDVYRPAADRVGKIFMIADDRVQGAVFDL
PEDIAKELLENEVPEGNSLSLITKLPPLQDDGPSSDNYGRFSSRDRMPRGGGGSRGSRFG
GRGGSSRGRDSWGGDDDRRGRSSGGGGSSWSRGGGSRGSSDDWLIGGGSDRRSSSSRAPS
RERSFGGACFNCGSSGHRAADCPDKRGF
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacggtgggagttccatctctttaccaggttcctcacctggaattctccaaa
accacttccaagaagaggtctacttgcttacctctctctctcaacaaacccttcctctct
cccttctctctccgcagacctcgcctcatccacacctcctcctcctctctcctcatccct
tccgccgtcgccactcccaactccgtcctcagcgaggaagccttcaaaagcctcggcctt
tccgacgaattcgacaacaccgacccctccccctccgacgacgatggtgaagagctcgct
atctccaaactcggtttgcctcagcgtctcggcgagtctcttgagaagcgtggtatcact
cacctcttccccattcagagggctgtgttggttcccgcacttcaaggacgagacatcata
gctcgtgctaagacgggaactggaaagactctagctttcggtatccctatcatcaaacgc
ctcactgaacaagctggagactactctgcgttcaggaggcctggtcgtcttgctaagttc
cttgtcctcgcgccgaccagagaactggctaagcaagtggagaaggagattaaggagtct
gcgccttatttaagcactgtctgtgtgtacggtggtgtctcttacaccattcagcagaat
gctctcactcgtggtgttgatgttgttgttggtactcctgggagaatcattgatttgatc
gaagggaggagcctcaagctgggtgaagttgagtacttggtgcttgacgaagctgaccag
atgcttgctgttgggtttgaggaggctgtggagtcgattcttgagaatctcccgcagaag
agacagagcatgcttttctcagcgactatgcctacttgggtgaagaagctggcgaggaag
taccttgacaatcccttgaacatcgatctggttggagaccaagatgagaagcttgcggaa
gggatcaaactgtatgcaatctcagccacatcgacatcaaaacggacgattctaagtgac
cttataacagtgtatgcaaagggtggcaagaccattgttttcacacaaacaaaaagagac
gcagacgaggtctctctagcattatcaaacagtataccttccgaggcacttcatggagat
atctctcagcatcaaagagagaggacactcaacggtttccgccaagggaagttcacagtt
ctagttgccactgatgttgcatcacgtgggcttgacatccccaacgtagatcttgttatc
cattatgaacttcctaatgacccagagacttttgtgcaccgttctggtcgtactgggcgt
gcagggaaagaaggctctgccattctcatgcacagcagcagccaaaagagaaccgtgagg
tctctcgagcgtgatgtagggtgcagattcgagtttattagcccaccgaccgttggagac
ttgttggaagcgtcagcagaccatgtggtggccactctgaacggtgttcaccctgagtct
attaagtttttctcagcaactgctcagaaactatttgaggagaaaggaacagatgcttta
gctgcagctctagctcaccttagcggtttctctcagccaccttcttctagatctctcctc
agtcatgagcagggatgggtgactttgcaattgataagagatccaacaaacgctagaggc
ttcctgtctgcaaggtctgtgactggtttcctttcagatgtttaccgtccagctgcagat
cgagttgggaaaatcttcatgatcgcagatgacagggtgcaaggagctgtttttgatcta
ccagaggacatagcaaaagagctgctagagaatgaagtgccagaaggaaacagtctatcc
ttgataacaaagttacccccgctgcaagatgatggaccgtctagtgataactatggacgg
ttctctagcagagacaggatgcctagaggaggaggaggttctagagggtcaagatttggc
ggtagaggaggatcatcacgaggacgtgatagttggggaggtgatgatgacagaagaggt
agaagcagtggtggtggaggaagcagctggtcccgtggtggtggttccagaggaagttct
gatgattggttgattggtggcggtagtgacagaagatcatcaagcagcagagctccttcc
agggagaggagttttggaggtgcgtgcttcaattgtggaagttcaggacacagggcagca
gattgtcctgacaagagagggttttaa
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