Brassica napus (rape): 106349428
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Entry
106349428 CDS
T04128
Name
(RefSeq) protein SPA1-RELATED 3 isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106349428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106349428
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
106349428
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Pkinase
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_Vps41
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF12
PK_Tyr_Ser-Thr
Beta-prop_RIG_1st
WDR54
Motif
Other DBs
NCBI-GeneID:
106349428
NCBI-ProteinID:
XP_013644843
LinkDB
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Position
A1:26259383..26263595
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AA seq
788 aa
AA seq
DB search
MEGSSNSNSRGFSDRNTEFPPVDECVRSMFGSSTHKPSSEEEDSLGVDPFVRSLEWGDVS
LRQWLDKPERSVDVLECLHVFRQIVEIVNAAHSQGIVVHNVKPSCFVMSSFNHVSFIESA
SCSDSGSEDGQKEEKGSYNKILERQIEKLEEEKKQRCFPMKHVLAMETSWYTSPEEEFGS
PSTCASDVYRLGVLLFELFCPVTSREEKSRIMSSLRHRVLPPQILLKCHKEASFCLWLLH
PEPTCRPSMSDLLQSDFITEPRDNLVEHEAAIELRDRIEEQESLLEFLLLIQQRKQDSAC
SLRDTISLLSSDIEQVVKRQLILKKQGSSYSDLSKDDHQSPSGPSTLLASRKRFRQVIPQ
VETDVEVDEESQGSTLLESSRLMRNFKKLETVYFLTRRRQMKAAALGKSLTRHSPLSSEN
GRGGSMISSVSNPVSNNDPLRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLV
CALAFDRDGELFATAGVNKKIKIFEYNSIVNSNRDIHYPVVELASRSRLSSVCWNSYIKS
QIASSNFEGVVQIWDVARSQLVTEMKEHKKRVWSIDISSADPTLLASGSDDGTVKLWSIN
QGVSIGTIKTKANICCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLSTMVGHNKTVSN
VKFVDSSTLVSSSTDNMLKLWDLSMSASGVNETPLHSFAGHTNLKNFVGLSVSDGYIATG
SETNEVFVYHKAFPMPVMSYMFSNTDSMSGLEIDDASQFISSICWRGQSSTLVAANSNGN
IKILEMVA
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttcttcaaactccaattctagagggttttcagacaggaacactgagttccca
ccagttgatgagtgtgtcagaagcatgtttggtagtagcacacacaaaccctcctccgaa
gaagaagattctttaggggttgaccctttcgttagatccttggaatggggtgacgtcagc
ttacgacagtggcttgataagcctgaacggtctgtagatgttctcgagtgcttgcacgtg
ttcagacaaatcgtggagattgtgaatgcggctcactctcaaggcattgttgttcataac
gttaagccatcttgttttgtcatgtcttcttttaaccatgtttccttcatcgaatccgct
tcttgttctgactccggctctgaggacggccagaaggaagagaaaggatcatataacaag
attttggagagacaaatcgagaagctagaggaagagaagaagcaacgttgttttccgatg
aaacatgtattagcaatggagacaagttggtatactagccctgaagaggagtttggttct
ccaagtacttgtgcctcagatgtctaccgtctaggcgttcttctttttgagctattctgc
cctgtgacttcaagagaggagaagtcaagaattatgtctagtttaagacatcgtgtactt
ccgcctcagatactgctcaaatgtcataaagaagcttctttctgcttgtggctactccat
cccgagccaacttgtcgaccatcaatgagtgacttgctgcagagtgattttataaccgaa
ccaagagacaatttggttgaacatgaagcagcaatagagctgagagatagaatcgaggaa
caagagtcgttactcgagttcttgctactgattcaacaaagaaagcaagattctgcttgt
agtttgcgggatactatttcacttctttcttcagacattgagcaagttgtgaagagacag
ctgattctgaagaaacaaggaagctcatactctgatctcagtaaagatgatcaccaatct
ccctctggtccttctacattgttggcctcaagaaaacggtttagacaagtgattcctcaa
gtggaaacagacgttgaagttgatgaagagagtcaaggaagcacacttcttgaaagctcc
aggttgatgagaaacttcaagaagctagaaacggtctactttctaacaaggcgcaggcaa
atgaaagctgctgctttagggaaatcattaactagacattcgcctttgagtagtgaaaac
gggagaggaggttcaatgataagctcagtaagcaaccctgtttccaacaatgatcctctg
agacaaggcgggtggatagatccattccttgagggtttatgcaaatacttatcgttcagt
aagctcagagtgaaagcagatttgaaacaaggagacttgttgaactcttctaacctagtt
tgcgcacttgcatttgaccgagatggagagcttttcgccactgctggtgtaaacaagaag
atcaagatcttcgaatataactccattgtaaacagtaaccgggacattcactatccggtt
gtggaattagctagccggtcaaggctaagtagtgtgtgttggaacagttacataaagagt
cagattgcatcaagtaactttgaaggcgttgttcagatatgggatgttgcaagaagccag
ttggttacagagatgaaggagcacaagaagagagtatggtccattgatatttcatcagca
gaccctactttgctggctagtggaagtgatgatggaaccgttaagctatggagtatcaat
cagggagttagtattggaaccatcaagacaaaggctaatatatgctgtgtccagttccca
tcagactcaggccggtctttagcgttcggttctgcagatcacaaagtgtattactacgat
cttaggaaccccaagattcctctgagcacaatggttggtcataacaagacagtgagtaat
gtcaagtttgtggattcatccactcttgtgtcttcttctactgacaacatgctgaagctt
tgggatttatcgatgtctgcttctggtgttaatgaaacccctcttcattcatttgctgga
cacactaatctaaagaactttgttggcttatctgtctctgatgggtatatagctacaggc
tcagagacaaacgaggttttcgtgtaccacaaggcattcccaatgccggtgatgtcatac
atgttcagcaacactgactccatgtcaggtcttgaaatcgacgatgcctcacagttcata
tcttcaatctgctggcgaggacagtcgtctacgctagtcgctgctaactccaatggcaac
atcaagattcttgaaatggtggcttga
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