Brassica napus (rape): 106349439
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Entry
106349439 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106349439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106349439
03012 Translation factors [BR:
bna03012
]
106349439
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106349439
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106349439
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106349439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
ATPase
nSTAND3
AAA_19
Dicer_dimer
T2SSE
AAA_11
PhoH
Motif
Other DBs
NCBI-GeneID:
106349439
NCBI-ProteinID:
XP_013644857
UniProt:
A0A078J242
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All DBs
Position
C7:complement(35530279..35536686)
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AA seq
1135 aa
AA seq
DB search
MKDRLPHPSLYVPPHQRLRSTPPDYAFHPLPLSHTQSQKPPFLPTRLVSAYDDSVSEVAQ
LPEPVAFHCANLDEWRRNLSMLLRDSVKQEVISREKKDRRDFDKLAALATSLGLYSHAYA
KVVVFSKIPLPNYRFDLDDKRPLREVSVHTDIVKRVDAYLKEHLSKKSKRTDGIPVNSFS
RTSSTSSMATDEGLLEQPELPAASKTALDKILWQRSLQLRERQDYWEKSVEGQRMLECRR
CLPAYKQRDVVLSAISQNQVIVVSGETGCGKTTQIPQFILESEIEANRGALCNIICTQPR
KISAMSVSERVACERGEPLGESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRSLRGV
THVIVDEIHERGMNEDFLLIILKDLLPRRPELKLILMSATLDAELFSSYFGGAGVIHIPG
FTYPVRSYFLEDILEMFRYRLTPYNQIDDYGQERLWKMNKQIPRKRKSQIASVVEDALRA
ADFKEFSPETRESLSCWNPDCIGFNLIESLLCHLCENERPGGILVFMTGWDDISSLKDKL
QIHPIFGNPNRVMLLACHGSMASFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVI
DCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGQCYHLYPKCLYDAFAEYQ
LPEILRTPLQSLCLQIKSLNFGTISEFLSRALQSPELLAVQKAIGYLKIIGALDENEQLT
ALGRYLAKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQ
FSRDHSDHLALVRAYERYKRAEEEAGVYDYCWKNFLSIQSMRAIDSLRKEFFSLLKDTGL
IDGTPATCKSGGNDENLTRAVICYGLYPGICSVVHNERSFSLKTMEDGQVLLYSNSVNAR
ETKIPYPWLVFNEKIKVNSIFVRDSTAVSDSVLILFGGSVSRGDFDGHLKMLGGYLDFFM
KPAVAEMYQTLKKELDELIQSKLLNPKMDMQAHRDLLSVIRLLVSEDRCEGSFVFGRQAL
KPLGTSAVSTQPTLVSRTESGPGGDNSKSQLQTMLTRAGHAAPMYKTKQLKNSKFQSTVE
FNGTQIMGQPCSNKKSAEKDAAAEAIRWLMGGAKESHKHVNHMSNLLKRSKKDHL
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcgtctccctcatccttccctctacgttccgcctcaccaaaggcttcgctcc
acccctccagattacgcctttcatcctcttcctctctcccacacgcaatcgcaaaagcca
ccattcttgcctactcgccttgtatcggcctacgatgacagcgtttccgaggttgctcaa
ctccccgagccggttgcatttcattgtgccaacttggatgaatggagaaggaacttgtct
atgcttttgcgcgattctgtaaagcaagaagttatttccagggagaagaaagatcgaagg
gattttgataaacttgctgcactcgctacaagtcttggattgtatagtcatgcatatgct
aaggttgttgtgttcagtaagatcccactccccaactataggtttgatctagatgacaag
agacctctgagggaggtgagtgtgcatacggacattgttaaaagagttgatgcttacctc
aaagaacacctcagtaaaaaatcaaagaggacggatggtatccctgtgaattccttctca
agaactagtagcacaagcagtatggctaccgatgaagggcttcttgagcaacctgagctc
ccggctgccagcaagactgcgctcgacaaaattctttggcagaggagcttacagctgcgt
gaacgacaagactattgggagaaatcggttgaaggtcaaagaatgctggaatgtcgcaga
tgtctccctgcatataagcagcgggatgtggtactgtcagcgatatcacaaaaccaggtt
attgttgtctctggagaaacaggttgtggcaagaccacacagattccacagtttatttta
gaatcagagattgaagcaaaccgtggagctttatgcaatatcatctgtactcaaccaaga
aaaatatctgctatgtctgtttcggagagggttgcttgcgagagaggagagccgttgggt
gaatccgttggatataaagttagattggaaggtgttagaggaagagatacacggctactg
ttttgcaccacaggcattttgttgagaaggttgttggtagatcgaagtttaagaggagtt
actcatgttattgtggatgaaattcatgagcgtggaatgaatgaagatttcttgctaatc
attcttaaagatctcctaccacgccgcccagagcttaagctgattctgatgagtgcaact
ttagatgctgagcttttctcgtcatactttggtggggcaggtgtaattcacattccaggc
tttacgtatccagttcgtagttatttcttagaggatattctggagatgttcaggtacaga
ttgactccgtacaatcaaattgatgactatggtcaagaaagattgtggaagatgaacaaa
cagatcccaagaaaaaggaagagccaaattgcgtctgttgtggaggatgcactgagagcg
gctgatttcaaggagtttagccctgagactcgagagtctttatcttgttggaatcctgat
tgtattggttttaatctcatagaatctctcctttgccatttatgtgagaatgagaggcct
ggtggtattttagtttttatgactggatgggatgatatcagctctctgaaagataaactc
cagattcatccaatctttggcaatccaaaccgggttatgttgcttgcttgccatggttct
atggcaagctttgagcagaggttaatatttgaagaacctgcaagtggagtgagaaagata
gttctggccactaatatcgcagaaacgagcatcacgatcaatgatgttgcttttgttatc
gactgtggaaaggcaaaagagacctcctatgatgcattaaacaacaccccctgtttgctt
ccttcttggatttccaaggtttcagctcagcagagaagaggaagagctggtcgtgttcaa
cctggccagtgttaccatctgtacccaaagtgcttatatgatgcttttgcagaatatcag
ttgcctgaaattctgagaacgcctttacagtcactgtgtctgcaaatcaaaagcttaaat
tttggaactatatctgagttcttatcaagggcactgcaatctcctgaattattagcggtt
caaaaggccattggatatctgaagataataggggcattggatgagaatgaacagctcaca
gctctaggtcgttatttggcgaagcttcccatggagccaaagcttggaaaaatgctcata
ctaggagccattctaggttgccttgatcccatattgactgttgcggctggcctgagtgtg
agagatcctttcctaacacctctggacaagaaagatctcgcagaagccgccaagtctcag
ttttcacgtgatcacagtgatcatcttgcacttgttcgggcatatgagaggtataaaaga
gctgaggaagaggctggggtttatgattactgctggaaaaactttctctcaatacagtcg
atgagagctattgattctctccggaaagagttcttctcattactcaaggataccggatta
atagatggaactccagcgacctgcaagtcaggagggaatgatgagaatcttacccgagca
gttatttgttatggattgtatccaggaatctgctcggttgtgcataatgagagatcattt
tccctgaagactatggaggatggccaagttcttctttattcaaattctgtaaatgctcgg
gaaacaaaaataccatatccgtggttggttttcaacgagaagattaaagtgaactctata
ttcgtgagggattcaacagctgtatctgactctgtgcttatcctctttggcggtagcgtt
tccagaggagactttgatggccacctgaaaatgttgggaggatacttggattttttcatg
aaacctgctgttgcggagatgtaccaaaccttgaagaaagagctggacgagctgatacag
agcaaattacttaatcctaaaatggacatgcaagcacaccgtgacctcttatcggttata
cggttattggtctctgaggatagatgtgagggaagctttgtgtttggtcggcaagcactt
aagcctttaggaacgtcggcggtgtcaacacaaccgacactggtttcaaggaccgaaagt
gggccggggggtgacaattcgaagagtcagctccaaacaatgctcacaagggcgggtcat
gcagcaccgatgtataagacaaagcagttgaagaacagcaagttccaatccacagtagag
tttaacgggacgcagatcatgggacagccttgcagcaacaagaagagtgctgagaaggat
gctgcagctgaagctatacgatggctgatgggtggggctaaggaaagccacaagcacgtg
aatcatatgtcaaacctgctgaagagaagcaagaaggatcacctctga
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