Brassica napus (rape): 106349659
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Entry
106349659 CDS
T04128
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X2
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106349659
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bna01009
]
106349659
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106349659
03036 Chromosome and associated proteins [BR:
bna03036
]
106349659
Protein phosphatases and associated proteins [BR:
bna01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
106349659
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
106349659
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
106349659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
106349659
NCBI-ProteinID:
XP_022542992
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All DBs
Position
A6:complement(1548210..1551816)
Genome browser
AA seq
488 aa
AA seq
DB search
MNGGGDDEDVVVAASADASPPLQWRFSQVFGERSAGEEVQPVDMILAIEFDHSGDHLATG
DRGGRVVLFERSDAKHSSGARRDLEETDYPVRHPEFCYKTEFQSHDPAFDYLKSLEIEEK
INKIRWCQTANGALFLLSTNDKIIKYWKVQDKKIKKICDINADPSGAVGNGTVANGVPEA
NISSLRLPVVVTSHESSPVAKCRRVYPHAHDYHINSISNNSDGETFISADDLRINLWNLE
ISNQSFNIVDVKPEKMEDLSEVITAAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHS
KLFEEPDAGGSKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDSGPVSTFQVH
EYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRVFGVSSGSTETGTLEASRN
PMRRHVPVPSRPPRLGGMIGRGSESAAGVDGNSNNALDYTTKLLHLAWHPNENLIACAAG
NSLYMYCA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtggtggtgatgatgaggacgtcgtcgtcgcagcttcggcggacgcgtctccg
cctctgcaatggagattctctcaggtcttcggtgagcgaagcgccggtgaagaagttcag
ccagttgatatgattttagcaattgagtttgatcattccggtgaccatctagctactggg
gaccgtggaggacgtgttgttctttttgagagaagtgatgccaaacatagcagtggagct
agaagggatcttgaggagacagattatccagtgaggcaccctgagttttgttataaaact
gagtttcagagtcatgaccctgcgtttgattatctcaagagtttggagatagaggagaag
atcaacaaaattagatggtgtcaaacagctaatggcgctctctttctcctatcgacaaac
gataaaatcatcaagtattggaaggtccaagacaagaagatcaagaaaatatgtgatata
aatgcagatccttcaggagctgtgggaaatggaactgtcgcgaacggagtacctgaagcg
aacatttcatcgctgcggttgccagtggtagtaactagccatgagtcgagccctgtggct
aaatgtagaagagtctatcctcatgctcatgattatcacatcaactcgatctcaaataac
agtgatggcgaaacatttatttctgctgatgatttgcgaatcaatctttggaatctggag
attagcaatcaaagtttcaacattgttgatgtgaagcctgagaaaatggaagatctgtct
gaggttatcacagcagcagagtttcatcctacccattgcaatatgctagcttacagcagt
tccaaaggctcgattcgccttattgatctgcgccaatcagctttatgtgattcacattcc
aaattgtttgaggaaccagatgcaggtggttctaaatctttcttcactgagattattgct
tcagtgtcagacatcaaatttgcaaaagaaggaagatacttacttagccgtgactacatg
acacttaagttatgggacatcaacatggattcaggtccggtatcaactttccaagttcat
gaatatctgaaaccgaagctctgtgatttatatgaaaatgattccatctttgacaagttc
gagtgttgtataagtggcaatggattgcgagcagctacaggttcttacagcaatctgttc
cgtgtgtttggtgtttcctcgggaagtaccgagactggaacgttggaagcaagcaggaat
ccgatgaggagacatgtcccagttccctcaaggccacccagactaggcggtatgataggt
agaggatcagagagtgctgctggagtggatgggaatagcaataatgctcttgattacaca
acgaagttgctgcatcttgcttggcatccaaatgagaacttaattgcttgcgctgctgga
aatagcttgtacatgtactgtgcttaa
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