Brassica napus (rape): 106351390
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Entry
106351390 CDS
T04128
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106351390
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Other 90S particles
106351390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
NRDE-2
PPR
PPR_2
Motif
Other DBs
NCBI-GeneID:
106351390
NCBI-ProteinID:
XP_013646653
LinkDB
All DBs
Position
A1:27740982..27753653
Genome browser
AA seq
1916 aa
AA seq
DB search
MVAPSKRVPSGKRNDSTKAFKSSRKPFKKTKDDVAARSEAMALQLEEVPDFPRGGGSSLS
KKEREKIHEEVDAEFDAGDERVAKRSKGGKPKKRNTSDVDELGSLFDGGLTGKRPRYANK
ITIKNISAGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEALDFTDFGTEDDENELLRDI
FSVGQLVPCIVLQLDDDKKEAGKRKIWLSLRLSLLHKGFSLDSFQPGMVVTANVKSVEDH
GYILQFGMPSITGFIKKSHEGTRELKTGQLIQGVVTNIDKERKIVSLSSDPDSVAKCVTK
DLSGMSFDLLIPGMMVNARVQSALENGLLLGFLMYFTGTVDLFHLQNPLCNKSWKDEYNP
SKMVNARILFIDPSTRAVGLTLNPHLVGNKAPPLHVSSGDIFDEANVVRVDKSGLLLELP
SKPVSTPAYVSTYDAAEDEVKKLEKKFKEGSRIRVRVLGLKQIEGLAIGTLKESAFEGPA
FTHSDVKPGMVTKGKVISVDTFGAIVQFPGGLKAMCPLQHMSEFEVRKPRKKFKVGAELI
FRVLGCKSKRITVTCKKTLVKSKLPILCSYADATEGLVTHGWITKIEKNGCFVRFYNGVQ
GFVARFELGLEPGSDPASVFHIGEVVKCRVTSAVHGTRRINLSFMMKPTSVSEDDSIKLG
SIVSGVIDSITPQAVTVHVKSKGLLKGTIFAEHLADHHDQAKLMISLLRPGFELDKLLVI
DIEGNNLALSSKYSLIKFAEELPSDLSQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAP
RSKAIDEPRADLSESFFVGQSVRANIVDVNQEKSRVTLSLKQSSCASVDASFVQEYFLTD
EKISNLQSSDITESECSWVEKFSIGSLIMGTVQDKNDLGLVVNFDNINNVLGFIPKYHLG
GTSLENGSVVQAVVLDISRAERLVDLSLRPELINSSAKEVSNRQSKKKRKRGISKELEVH
QRVSAVVEIVKEQYLILSIPEHNYTIGYAAVSDYNTQKLPVKQFTTGQSVVASVEALQNP
LTSGRLLLLLDSVSGSSETSSKRAKKKANCEVGSVVQAEITEIKPFEVRVNFGQSFRGRI
HITEVNDVGTNEEPFAKFRVGQSVSARVVAKPCHTDNKKSQLWELSVKPAILRDSGELTE
VREQLEFVSGEPVCGYVYKVDKEWVWLAISRNVTARIFILDTACEARELEEFEGRFPIGK
AVSGYVLTYNKEKKTVRLVQRPLLNIQKSIGNDGGPKKDKLDSSIPGDDATLFIHEGDIL
GGRISKILPGVGGLRVQIGPYVFGRVHFTEINDSWLSNPLDGLHEGQFVKCKVLEISNSS
KGTLQIELSLRTSLDGMSSDHISEASSNNVFKRFERIEDLSPDMGIEGYVKNTMSKGCFI
MLSRTLDAKVLLSNLSDTFVKDPENEFPVGKLVTGRVLNVEPLSKRVEVTLKKVNAGGPS
KSESYDLKQFHVGDMISGRIKRVEPYGLFIEIDQTGMVGLCHKSQLSDNHIEDIHARYEA
GESVTAKILKLDEERRRISLGMKSSYFVNGDDDTAQPRSEENADEASMECDPINGSKSGV
LAAVGDFGFQETNSGTSLAIAQVESRASILPLEVDLDDIEEADLDKNQNQKLQGADKDEK
SKRREKQKDKEEREKKIQAAEGRLLENHAPESADEFEKMVRSSPNSSFVWIKYMAFMLSL
ADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDP
KKVYNALLGVYERTEQYKLADKLLDEMIKKFKQSCKVWLRKIQSYLKQDEENIQSVVNRA
LLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEV
DVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSAGDEERVEYVKQRAMEYADSTLA
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atggtggctccatcgaaaagagttccaagcggaaaacgcaacgattcaacaaaggcattc
aaatcatcgaggaaaccgttcaaaaagacgaaggacgatgtcgccgcaaggtctgaagcc
atggctctgcagctcgaagaggttcccgacttccctcgaggtggaggctcttctctgagc
aagaaagagcgtgagaagattcacgaagaggtcgacgctgagtttgacgctggtgatgag
cgtgttgctaagaggagtaaaggagggaaacctaagaagagaaacactagcgatgtagat
gaattgggatctctttttgacggtggtttaactgggaaacggccaagatatgctaataag
atcaccattaagaatatttccgccggaatgaagcttttgggggttgttactgaagtcaac
cagaaagatattgtaattagtcttccagggggcttacgtggtttagttcgcgcaagcgag
gcgttggattttacagatttcggaactgaggacgatgaaaatgaacttcttcgagacatc
ttttctgtgggtcagcttgttccttgcattgtgttgcagttagatgatgataagaaggag
gcgggcaaaagaaaaatatggctttcattgcgactttccttattgcacaagggattcagt
ttggattcctttcaacctgggatggtagtaactgcaaatgtgaaaagcgtggaagatcat
ggttatatccttcaatttggaatgccttctatcacaggatttatcaagaaaagccatgaa
ggaactcgggagttaaagactgggcagcttattcagggcgtggttacaaatattgataaa
gaacgtaaaattgttagtcttagttctgacccagattcagtggcaaagtgtgtgaccaag
gatttgagtgggatgtcgttcgatcttctcatcccaggcatgatggttaatgcccgtgtt
caatctgcccttgagaatggattactattaggatttcttatgtactttactggaacggtt
gatctttttcatctacaaaatccattatgtaacaagagctggaaggatgaatataatccg
tctaagatggttaatgctagaatattgtttatcgatccatcaactagagctgttggtttg
acgttaaacccacatcttgttggcaacaaggctcctcctctgcatgtctccagcggagac
atattcgacgaagcaaacgttgtccgtgttgataaatcaggccttcttcttgagctccct
tctaagcctgtttcaacgccagcatatgttagcacatatgacgctgctgaagatgaagtt
aagaaacttgaaaagaagtttaaggaaggaagccgcatccgtgttcgagtcctcggcctt
aagcagatagaggggttggccatagggactttaaaggaaagcgcctttgaaggtccagcg
ttcacccactcagatgtcaagcctggcatggtgacgaagggtaaagtcatatctgttgat
acattcggtgccattgtgcaatttccgggtggtctgaaagcaatgtgcccacttcagcat
atgtctgagtttgaagttaggaagcccaggaagaagttcaaggttggagctgaattaata
tttcgtgtgctgggctgcaaatcaaagagaataactgttacctgcaagaaaacacttgtt
aagtctaaacttccgattttgtgttcttacgctgatgcaactgaaggactagtgacacat
ggctggataacaaagattgaaaagaatggatgctttgttcgcttctataatggagtgcaa
ggatttgttgccagatttgaacttggtttagagcctggaagtgatcccgcttcagtgttt
catattggggaggttgtgaaatgtagagttaccagtgcggttcatggtactcgaaggatc
aacctcagttttatgatgaagccaacaagcgtttctgaagacgattcaatcaagttaggt
agtattgtatctggggtaattgatagtataactcctcaggcagtcactgtccatgttaaa
tccaaaggtcttctgaagggtacaatttttgcagaacatttagctgatcatcatgaccaa
gcaaaattaatgatatcacttttaagacctggatttgagcttgataagctgctggtaata
gacattgaaggcaataacctggctctctcctcaaaatattctctcatcaagtttgctgaa
gagctcccttcggatttaagtcagctccagccaaactcagtggttcatggttatgtttgt
aacctgattgagaatggctgtttcgtccgtttcctgggtcggttgactggtttcgccccg
agaagcaaggcaattgacgaacccagggcagatctctcagaatccttctttgttggacaa
tcggttcgggctaatatagttgatgtcaatcaagaaaaaagcagggtgactctttcattg
aaacagtcatcttgtgcttctgtagatgcttcttttgttcaagagtatttccttacagat
gagaagatctcgaacctgcaatcatctgatattactgaaagcgagtgtagctgggttgag
aaattctctattgggagtttgatcatgggaaccgtacaggataaaaatgaccttggtttg
gtggtgaattttgacaatattaataatgtccttggttttatacctaagtatcatttgggt
ggaactagtttggaaaacggctctgttgtccaagcagttgttcttgatatttctagggca
gagagactagttgatttgtctttgaggcctgagctcataaacagctcagccaaagaggtg
tccaaccgtcagtcaaaaaagaaacgtaaaagaggtatttccaaggaacttgaagtccac
cagagggtcagcgctgttgtagagattgtgaaggagcaatacttgattttgtcgattcca
gaacataattacactattggatatgcggcagtatcagactataacacacagaagttacca
gtgaaacagtttaccactggacaaagtgttgttgcgtctgttgaggctctgcaaaaccct
ttgacgtccgggaggttgcttttacttcttgactctgtttccggtagttctgagacatcg
tctaagagggcaaagaagaaagccaattgtgaagttggttctgttgtccaagccgagatt
actgaaattaagccttttgaagtaagagtaaactttggccaaagtttccgaggaagaatc
cacataacggaggtgaatgatgttggtacaaatgaagaaccttttgccaaattcagagtt
gggcaatcagtgtctgcaagggttgttgcaaagccctgtcatacggataataaaaagagt
caactctgggagctttctgtaaagcctgcaatacttagagactctggtgagctgactgaa
gtgagggaacaacttgagtttgtttctggagagcctgtctgcggatatgtctacaaagtg
gataaagaatgggtttggttggcaatatctcgcaatgtgactgcacgcatattcatttta
gacactgcatgcgaagctcgtgaacttgaggagttcgaggggcgttttcccattggtaaa
gctgtatcaggctatgttttgacgtacaataaagagaagaaaactgtacggttggttcag
cgtccactactgaatatccagaaaagcattggcaatgatggagggcctaaaaaggataaa
ctagacagtagcattcccggtgatgatgctactctattcattcatgaaggagacattttg
ggtggaagaatttctaagatacttcctggtgttggtggacttcgtgtgcaaataggtcct
tatgtgtttgggagagttcactttactgaaatcaatgattcatggctctccaatccatta
gatggtcttcatgaaggccaatttgtcaaatgcaaggtcttagaaatcagcaattctagt
aaagggactttgcaaattgaactgtcattacggacatcactagatggcatgagttcggac
catatctcagaagcttccagtaataatgttttcaagcgttttgaaaggattgaagatctt
tctcctgatatgggaatcgagggttatgtcaagaatacgatgtcaaaaggttgttttatc
atgctttcaagaacactcgacgcaaaagttctactgtcaaatttatctgacacttttgtc
aaggatcccgaaaatgaatttccagtaggaaaacttgtcactggcagggtgttaaatgtg
gagccgttatcgaagcgggtagaagtcactttgaagaaagtaaatgctggtgggccatca
aaatctgaatcttatgacctgaagcagttccatgttggagacatgatttctgggagaatc
aaacgtgtggagccctatggcttgttcattgaaatagaccaaacgggcatggttggatta
tgtcataaatcacaactttctgataatcatatcgaggatatacatgccagatatgaagct
ggggaaagcgtcaccgcaaagattttaaagctggacgaggaaaggcgacgtatatcgctt
gggatgaagagttcgtattttgtgaacggcgatgatgacacggcacagccacgttctgaa
gaaaacgctgatgaagccagcatggagtgtgatccaatcaatggttcgaagtcgggagtt
cttgcagcagttggtgattttgggttccaggaaacaaacagtggcacttctctggctatt
gcccaagtagagtcaagggcttctatccttccgcttgaagttgaccttgacgacattgag
gaggcggaccttgacaagaatcaaaatcagaaactacagggagccgataaagatgaaaag
agcaagagaagggaaaagcaaaaagacaaagaggaaagagagaaaaagatacaagctgct
gaaggaagattgctggagaatcacgctcctgagagtgctgatgaatttgagaaaatggtt
agaagctctccaaatagcagctttgtctggattaagtatatggcgttcatgctcagcttg
gctgatattgagaaagccaggtccattgctgagagggctttgaggactataaatattcgt
gaagaagaagagaagctaaacatatgggttgcatacttcaatttggaaaatgaacatgga
agtcctccagaggaagctgtaaagaaagtttttgaaagagcgcgtcaatactgtgacccg
aagaaagtttacaatgccctcttgggcgtgtacgagagaacagagcaatataaattggct
gataagctgcttgatgagatgatcaagaagttcaagcaatcctgcaaggtttggttacgg
aagatacaaagttatctaaagcaggacgaggaaaacattcagtccgtcgtgaatcgtgcc
ttgctatgtcttccgcgccataagcacattaaatttatatcacagacagctattcttgag
ttcaaatgcggagttgcagacagagggagatcactttttgaaggcgttcttagggagtac
ccgaaaagaacagacttgtggagtgtttatcttgaccaggagatccggttgggagaagtt
gatgtgattaggtctttgttcgagagagccattagcttgagcttgcctcccaagaagatg
aagttcttattcaagaagtttttggaatatgagaaatctgctggtgacgaggagagagtg
gagtacgtgaagcaaagggcaatggagtatgctgacagtaccttggcctga
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integrated database retrieval system
