Brassica napus (rape): 106352352
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Entry
106352352 CDS
T04128
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106352352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106352352
03041 Spliceosome [BR:
bna03041
]
106352352
03036 Chromosome and associated proteins [BR:
bna03036
]
106352352
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106352352
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106352352
Complex B
106352352
Complex C
U2 SnRNP specific factors
106352352
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
106352352
TFTC complex
106352352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
106352352
NCBI-ProteinID:
XP_013647456
LinkDB
All DBs
Position
A1:complement(28024569..28028710)
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AA seq
1214 aa
AA seq
DB search
MYLYSLTLQQATGITCAINGNFSGGKAQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGGQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMVGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTICYSVCGVDCGFDNPV
FAAVELDYSEADQDPTGQASSEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLVVSAAMHKQKTTFFFLLQ
TEYGDVFKATLDHDGDHVSELKIKYFDTIPVAASICVLKLGFLFAASEFGNHGLYQFQAI
GDEPDVESSSSNLMETEDGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT
LVLSIGETVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPASLFL
NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFAISVRGRSAMLCLSSRPWLGYIH
RGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMFDRLGETFNETMVPLRYTP
RKFVVHPKKKLLVIVESDQGAFTAEEREAARKECFQAGGAGENGNGSADQMENGGDDEDK
EDPLCDEQYGYPKAESEKWVSCIRVVDPKTADTTCLLELQDNEAAYSVCTVNFHDKEYGT
LLAVGTVKGMQFWPKKRLVAGFIHIYRFVEEGRKLELLHKTQVEGVPLALCQFQGRLLAG
IGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDCVPRWLTASHHVDFDTMAGADKFGNIYFVRLPQDVSEEIEEDPTGGKIKWEQGKL
NGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFS
HLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPIDLQRKIADELDRTPA
EILKKLEDARNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagcttaaccctccagcaggcgacgggaatcacctgcgcgatcaacggc
aacttctccggcggaaaggcgcaggagatcgccgtcgctcgcggcaagatcctcgatctc
ctccgccccgacgaaaacggtaaaatccagacgattcactccgtcgaagtcttcggcgcg
attagatccctagctcagtttaggctaaccggcggccagaaggattacatagtcgtaggg
tcggattcgggtaggatagtgatcttagagtacaacaaggagaagaacgttttcgataag
gttcatcaggagacgtttgggaagtcggggtgtaggaggattgtccctgggcagtacttg
gcggttgatcccaaggggagggctgtgatggttggagcttgtgagaagcagaagcttgtg
tatgtgttgaatagggatacagctgctaggttgactatttcgtctcccttggaggctcat
aagtctcatacgatttgttactcggtttgtggtgtggactgtgggtttgataatcctgtg
tttgcagctgttgagcttgattactctgaggcggatcaggatccgacggggcaggcgtct
agtgaggctcagaagcatttgactttctatgagcttgatttggggttgaaccatgtttct
aggaagtggtctgagcctgttgataatggtgcgaatatgcttgtgactgttcctggagga
gctgatgggccgagtggggttttggtttgtgctgagaatttcgttatttataagaaccag
ggtcatccggatgtgagggctgtgattccgaggagagctgatttgcctgcggagagaggg
gtgttggtggtttctgctgctatgcacaagcagaagacgactttcttcttccttctccag
accgagtatggtgatgttttcaaggcgactttggatcatgatggggatcatgtgtctgag
ttgaagatcaagtatttcgacactattcctgtcgctgcgtccatatgtgtgttgaagctg
gggtttcttttcgctgcttcggagtttgggaaccatggtttgtaccagtttcaggcgata
ggggatgagcccgacgtggagtcttcttcctctaatctgatggagactgaagatgggttt
caacctgtgttttttcagccgaggagacttaagaaccttgttaggattgaccaagtcgag
agtctgatgccgctcatggacatgaaggtccttaacctttttgaggaagaaacccctcag
atcttttcactctgtggacggggtccgcgatcttctctgaggatactgaggcctggttta
gccatcagcgagatggccgtctctcagcttccgggtcagccaagtgcggtgtggacggtg
aagaagaatgtgagtgatgagtttgatgcgtatatcgttgtctccttcaccaatgctacc
ctggttctttcaattggtgaaacagtcgaagaagtcaacgacagtgggtttcttgatacc
accccttccctggccgtgtctctgattggtgatgattcgctcatgcaagtccatcccaat
ggtatccgccacataagggaagatgggcgtattaatgaatggagaactcctggcaagagg
tcgattgtcaaagttggttataaccggcttcaagtggtgattgcgttgagtggtggagag
ctcatttattttgaggcagatatgactggtcagctgatggaggtggagaaacatgaaatg
tctggagatgtggcctgcctggacattgcgcctgttcctgaaggaagacaaagatcccgc
ttccttgctgtgggatcctatgataacacagtgcgtattctgtctcttgacccagatgac
tgtctgcagattctcagcgtgcagagtgtctcttccgctccagagtctttgctgttcctc
gaagttcaagcatcaattggtggggatgatggtgctgatcacccggctagcctcttcctt
aactctggtctgcagaacggtgttttgttcagaacagtggttgatatggtgactggtcag
ctttctgattctcgttctcggttcttggggctgaagccacccaagttattcgccatttct
gtgagaggtcggtctgcgatgctgtgtttgtctagtcgaccttggcttggttatatacat
cggggtcacttccacttgacgcctctctcgtacgagactttggaatttgctgcccccttt
tcatctgatcagtgtgctgaaggtgttgtctctgttgccggggatgctctaagaattttc
atgtttgatcgtcttggggaaacgttcaacgaaaccatggttcctctgaggtacacgcct
agaaagtttgttgtacatcccaagaagaagctgttggttatcgttgagagtgaccaagga
gcatttaccgcagaagagcgtgaagcggcaagaaaggaatgcttccaggccggtggagca
ggagaaaatggtaatggcagtgcagatcagatggagaatggtggggacgatgaggataag
gaagacccactctgtgatgagcagtatggttatcccaaagccgagtcagaaaagtgggtc
tcttgcatcagagttgttgaccctaagacagctgatacaacttgtctactggaacttcaa
gacaacgaagctgcttacagtgtctgcacggtgaatttccacgataaagagtatggtact
ttgctggctgttggcacagtcaaagggatgcagttctggcccaagaagagactagtggct
gggttcatacatatttataggtttgtggaggaagggagaaaacttgagctgcttcataag
actcaagtagaaggtgttcctcttgcattatgccagttccagggaagactgctggcagga
atcggacctgtgcttaggttgtatgacttggggaaaaagagactgcttaggaaatgtgaa
aacaagctcttcccaaacaccattatctctatccaaacttaccgtgaccgtatttacgtt
ggtgacattcaagagtcattccattactgcaagtacaggcgcgatgagaatcagttatac
atatttgccgatgactgcgtgccgagatggctgacagcatcgcaccatgtggatttcgac
accatggcaggtgcagacaagtttgggaatatctactttgtgaggctgcctcaggatgtg
tcggaggagattgaagaagacccgacaggcgggaagatcaagtgggagcaaggaaagctt
aacggagcaccgaacaaagtggacgagattgtgcagttccacgtcggggacgttgtgacg
tgcttgcagaaagcttcgatgatcccaggtggatcagaatcaatcatgtatgggacagtg
atgggtagcatcggagcactgcatgcattcacatcccgtgatgatgttgatttcttctct
catctggagatgcacatgaggcaggagtatcctcctctctgtgggagagaccatatggct
tacagatctgcctattttccagtcaaggatgtgatagatggagatctctgcgagcagttt
ccaacgcttccaatagatttgcagaggaaaatagcagatgagttggatagaacacctgct
gagattctcaagaagcttgaagatgctaggaacaagatcatttag
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integrated database retrieval system
