Brassica napus (rape): 106352403
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Entry
106352403 CDS
T04128
Name
(RefSeq) putative pectate lyase 11
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106352403
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106352403
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106352403
NCBI-ProteinID:
XP_013647496
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Position
A6:complement(24875043..24878125)
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AA seq
412 aa
AA seq
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MVSYSNNLFVYAFICLLSIGNTFVLSSSSLPHTQDPNLVVDEVNRSVFNASRRSLAYLSC
RTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRDGRIYVVTDAANDDPVNPRPGT
LRHAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCIKIHYETNIII
HGIHIHDCKPGSGGMIRDGPRHTGWWVPSDGDAVAIFGGKQIWIDHCSLSNCDDGLIDAI
HGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFH
VVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESEWRGWNWRSEG
DMLLNGAYFRQSGAGASSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggtttcgtattctaataatctttttgtttacgctttcatatgtctcctatcaatcggc
aacacgtttgtattatcttcaagttcgttgccgcatactcaagatcctaatctagtagtt
gacgaggttaatagaagtgtattcaatgcgtcaaggaggagcctcgcctacctatcttgt
agaacgggtaatcctattgatgattgttggcgttgcgatccaaactgggagacaaatcgc
caacggctagccgattgtgctatagggtttggcaaaaacgctatcggaggccgcgatggc
agaatttacgtggtcacagatgcggccaacgatgatccggtaaaccctagaccaggaacc
ctaagacatgcggtcacgcaagaagaaccattatggatcattttcaagagagatatggtc
attaggctcaagaaagaacttatcatcacatctttcaagaccattgatggtagaggctca
agtgttcatataaccgatggaccgtgcattaagatccactatgaaactaacatcatcata
catggtattcacatccatgactgcaaaccaggatcaggtggcatgattagagatggccca
cgtcacaccgggtggtgggtcccatcagatggagatgcagtggcgatatttggaggcaaa
cagatttggatcgaccattgctctttgtctaactgcgatgatggtctcatagacgccata
catggttcgaccgctataacaatatcgaacaactacatgacgcaccatgacaaggtcatg
cttttaggacacagcgatagctatacccaggacaagaacatgcaagtcaccattgcgttt
aaccatttcggagaaggactcgttcaaaggatgccacggtgcaggcatggatatttccat
gtggtgaacaatgattacacacactgggaaatgtatgctatcggtggaagtgcttctccg
acgatatacagtcaaggcaatagatttctcgctcctaatacccgatttaataaagaggtt
acaaaacatgaagatgcacccgaaagcgaatggagaggttggaactggagatcggaaggg
gatatgttgttgaacggagcatatttccggcagtcaggtgccggagcttcatcgacatat
gcaagagcttctagcctaagtgctaggccatcatcgcttgtgggttccatcacgacgaca
gcaggaacactaagttgtcggcgaggccgtcgctgttga
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