Brassica napus (rape): 106352880
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Entry
106352880 CDS
T04128
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106352880
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106352880
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106352880
NCBI-ProteinID:
XP_013647978
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Position
A7:17032361..17036033
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AA seq
488 aa
AA seq
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MHPPHFSISILLLCFYFFFTLLEATKPLNLTLPHQHPSPDSVALHVTSTINASLSRRQLS
SSTCGSGNPIDDCWRCDSSDWSSNRQRLADCSIGFGSGTLGGKNGRIYVVTDSSDNNPAN
PTPGTLRHAVIQEEPLWIVFSSNMFIRLKQELIINSYKTIDGRGAAVHVTGNGCLTIQYV
QHVIIHNIHIYDCKPSGGAVVAASPTKVGRRGRSDGDGISIFGSQKIWVDHCSLSHCTDG
LIDVVLGSTAITISNNYFTHHDEVMLLGHDDKYVLDTGMQVTIAFNHFGQGLVQRMPRCR
RGYIHVVNNDFTSWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSTDDGEWANW
NWRTEGDLMENGAFFVASGEGMSTMYSKASSVEPKAAALVDQLTQNAGVFGGPRDDQGQS
GDSYSGYGGGGGGTGAIGGTSRGSSSNGDNNFFGMIFGNNAPPRPRLTLLLLSLLMICVL
STSTLLLW
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctcctcacttctccatctccattctcctgctctgcttctacttcttcttcaca
cttctcgaagctactaaacctctaaatctcactctccctcaccaacacccttctcctgac
tccgtcgctctccacgtcacaagtacaatcaatgcatccctctcacggagacaactctcc
tcctccacttgcggctccggaaacccaatcgacgactgctggcggtgcgactcctccgac
tggtcctccaaccgccaaagactcgccgactgctctatcggcttcggctccggcaccctc
ggcggcaaaaacggccggatctacgtcgtcacagactcttccgacaacaaccccgccaac
ccaactccgggaacactccgtcacgccgtcatccaagaagagcccctctggatcgtcttc
tcctccaacatgttcatccgcttaaaacaagaactcatcatcaacagctacaaaaccatc
gacggccgcggagccgccgtccacgtcaccggcaacggctgcttgaccatccagtacgtg
caacacgtcatcatccacaacatccacatctacgactgtaaaccttccggaggcgccgtc
gtcgccgcctcgccgacgaaagtcgggaggagaggtagatccgacggcgacgggatctct
atcttcggatctcagaagatctgggtcgaccattgctccttgagtcattgtaccgatggg
cttatcgatgtggtgttgggctcgacggcgattacgatatcgaataattacttcactcat
cacgatgaggtgatgctgttgggtcatgatgataagtacgtgctggatacggggatgcag
gtgacgattgcgtttaatcatttcggacaggggcttgttcagaggatgccgaggtgtcgg
agagggtatattcatgtcgtgaataatgattttacttcgtggaagatgtatgctattggt
ggtagtggtaatcccactattaacagtcaagggaatcgttactctgctccttctgatcct
agcgccaaagaggtgacgaagcgagtggattcgacagacgatggtgagtgggcgaattgg
aactggagaacagaaggagatttgatggagaacggagctttctttgtggcgtctggtgaa
ggaatgagtacaatgtactctaaagcttctagtgtggagcctaaagctgcggctctcgta
gaccagctcactcaaaacgctggcgttttcggcggtcccagggatgatcaaggtcagagc
ggcgattcttattctggttatggaggcggcggtggagggacgggcgctataggtggtacg
tcaagaggaagcagcagcaatggtgacaacaatttctttgggatgatattcggaaacaat
gcaccgcctcgaccacgtttaacgttattgttgttgtctttgttaatgatttgtgttttg
tcgacatcaactctattattgtggtag
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