Brassica napus (rape): 106353186
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Entry
106353186 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106353186
03041 Spliceosome [BR:
bna03041
]
106353186
03036 Chromosome and associated proteins [BR:
bna03036
]
106353186
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106353186
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106353186
mRNA cycle factors
Common to processing body (P body) and stress granule
106353186
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106353186
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106353186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106353186
NCBI-ProteinID:
XP_048593052
LinkDB
All DBs
Position
A7:17919332..17922860
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AA seq
643 aa
AA seq
DB search
MSSSWADVSEAERAPSGWGYGNSRPSRTNYVPPHLRGRGASPGSDRGGYGGGGGYGGRGG
QGYGGRGGGGGGGGYVGRGGGGGGWNNRSGGWDRRDTETNPFGNDGNVEPVADEQENTGI
NFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGR
DLMACAQTGSGKTAAFCFPIISGIMKEQQHVERPRGVRGVYPLAVILSPTRELACQIHDE
ARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVKYLA
LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAV
GRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLEN
WLCMNGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP
NDIDDYVHRIGRTGRAGNSGLATAFFNDNNTSMAKPLAELMQEANQEVPDWLSRYASRAS
FGGGKNRRSGGRFGGRDFRRESFGQGGGGGGGYYGGGGGGYGAVPGGGYGAMPGGYGNVP
GGGYGAVPGGYVPYGRGGGAYYGGGYGTVPNQGYGPGVASAWD
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcatgggctgatgtttctgaagcggagagagcaccatctggttggggttac
gggaactctcgtccctcgcgaaccaactacgtgcctcctcatcttaggggccgtggagct
tcacctggtagcgatcgtggaggatatggtggtggtggtggttatggtggtagaggaggc
caaggttatggtggtcgaggaggcggaggcggaggcggaggctatgttggtagaggagga
ggtggtggaggttggaataacaggagtggaggttgggaccgtagggatactgaaactaac
ccgtttggtaatgatgggaatgtagagccggttgctgacgagcaggagaacacaggcatt
aactttgaggcgtatgaagatattcccatcgagacaagtggggataatgtgccgcctcct
gttaatacatttgctgagatagaccttggagaggctctgaatcttaatatccagaggtgc
aagtacgtgaagccgacccctgtgcagcgtaatgcgattcccatcttggctgctgggagg
gatttgatggcttgtgctcagacggggtctgggaagacagctgccttttgttttcctatt
attagtgggattatgaaggagcagcagcatgtggagagaccacgtggagttcggggagtg
tatcctcttgctgtcattctctcaccaacaagggagttggcatgtcagatacatgatgaa
gctagaaagttctcctatcaaactggtgtgaaagttgtggttgcttatggaggaacacca
gtcaaccaacagatacgggagcttgaaagaggagttgatattcttgttgcaactcctggg
agattaaatgatttgcttgagagaggtagagtctcactacagatggtaaaatacctagca
cttgatgaggcggataggatgctggacatgggttttgaaccgcaaatcaggaagatcgtt
cagcagatggatatgcctcctcctggtgtccggcagacaatgctgttcagtgctacattt
cctagggagatacagagacttgcatctgattttctttcaaattacatatttctggctgtt
ggaagagtgggttcaagtacggatttaatagtccaaagagtagaatttgttcacgattct
gacaaaagaagccatttaatggaccttcttcatgctcagagggagaatggtaaccaagga
aagcaagctttgactcttgtatttgtggagacaaagaagggagctgactcgttggagaat
tggttgtgcatgaacggattcccagcaacgaccatccacggtgataggtcacaacaggaa
agagaagtggcactgagatcattcaagactgggcggacacctattttggttgcaactgat
gtggcagcacgtggtcttgacattccacacgtggcccatgtggttaactttgatctacca
aacgatatcgatgactatgtccaccgtatcggacgaacaggacgtgcaggcaattcagga
ctagcaactgctttcttcaatgataacaacacatcaatggccaagccactagctgagcta
atgcaggaagcaaaccaggaggtccctgactggcttagtcggtatgcatctcgtgcttca
tttggaggtggtaagaaccgacgatctggtgggcggtttggtggccgtgacttcaggaga
gaatcttttggccaaggaggaggcggtggtggtggctactatggtggtggtggaggagga
tatggtgccgttcccggtggtggatatggagcaatgcctggtggatatggaaacgtacca
ggtggtggttatggagccgttcctggtggttatgtaccatacggcagaggaggtggtgct
tactacggtggaggatatggaaccgttcctaaccaaggctacggccctggagtggctagt
gcttgggactaa
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