Brassica napus (rape): 106353328
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Entry
106353328 CDS
T04128
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
bna
Brassica napus (rape)
Pathway
bna04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
106353328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106353328
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106353328
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
106353328
NCBI-ProteinID:
XP_013648526
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Position
A7:complement(18828614..18831443)
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AA seq
594 aa
AA seq
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MQKRIGLSFPEEVLEHVFSFIHLDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSPAT
VIRRFPKVRSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSKAYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCDGFSTDGLAAIASTCRNLKELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLASDVCFSALERLVSRCPNLKSLKLNRAVPLEKLATLLRRAPQLEEL
GTGGYTADVRSDLFSDLYVALSGCKKLKCLSGLWDAAPAYLPAVYSVCGRLTTLNLSYAT
VQSYDLVKLITLCPKLQRLWVLDYIEDTGLEVLASTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSAGCPKLESVLYFCRQMTNDALVAIARKRPNMTRFRLCIIEPKAPDHLTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGKYAKKMEMLSVAFAGDSDLGMHHVLSGC
DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCAVERVFIYRTVAGPRFDMPDFVWNMDQQSSMSVSRQIITTNVL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagcgaatcggcctctcgtttcccgaagaagttctggagcacgtgttctccttt
atccacctcgacaaggataggaactccgtttccctcgtctgcaaatcgtggtacgagatc
gagcggtggtgcaggaggagagtcttcatcgggaactgctacgccgtgagccccgcgact
gtgataaggaggttcccgaaagtgagatccgtggagctgaaagggaaaccgcacttcgct
gacttcaatttggtgccggagggatggggagggtacgtgtatccgtggattgaggcgatg
tcgaaggcgtacacgtggctggaggagattaggctgaagaggatggtggtgagtgatgag
tgcttggagcttatagctaagtcgtttaagaattttaaagttctggtgctttcttcgtgc
gatggcttctccaccgatggcctcgctgctatcgcctccacttgcaggaatctgaaagag
cttgatttgcgtgagagtgatgttgacgacgttagcggacactggctaagccatttccct
gatacatacacttccctggtatcactcaacatctcttgcttagcctccgatgtatgtttc
tctgctctggagaggctggtgagtaggtgtcccaatctcaagtctctcaagcttaacaga
gccgttcctcttgaaaaattggctactttgcttcgaagagcgcctcagctggaggaattg
ggcaccggtggctacactgctgatgtgcgttcagatttgttctctgatttatatgtagcc
ctctctggttgcaagaagttgaagtgcttatctggcctttgggatgctgctcctgcctat
ctcccagctgtttattcggtttgcggtcggcttacaactttgaacctgagttatgcaact
gtccagagctatgatcttgtcaagcttattaccttatgtcctaaactgcaacgcctctgg
gtgctggactacatcgaggatactggtcttgaggtgcttgcttcaacctgcaaggacctt
cgagagctgagagtgtttccgtctgagccttttgtcatggagccaaacgttgcattgacg
gaacaagggcttgtctccgtctccgcgggctgtccaaaactcgagtctgttctctacttt
tgccgccaaatgaccaatgatgcgttggtagcgattgctaggaaacgtcccaacatgact
cgcttccgtttgtgcatcattgagccgaaagcccctgaccatctaacactagagccactg
gatgtgggtttcggagccattgtagagcactgcaaagatctccggcgtctctccctatca
gggctcttgaccgacaaggttttcgaatacattgggaagtatgcaaagaagatggagatg
ctatcggtggcgtttgcaggagacagtgacttagggatgcatcatgttttgtcagggtgc
gatagcctgaggaagctagagataagggactgcccgtttggagacaaggcgttattggca
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcttgttccgtgagtttt
ggagcctgtaagttattaggacagaagatgccaaagctcaatgtggaagtcatcgatgag
cggggtccacctgactcgagaccagagagctgcgctgttgagagagtgtttatataccga
acagtagcgggtcctcggtttgacatgcctgacttcgtctggaacatggaccaacagtca
tcaatgagtgtttccaggcaaatcatcactactaatgtgttatga
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