Brassica napus (rape): 106353540
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Entry
106353540 CDS
T04128
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106353540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106353540
03009 Ribosome biogenesis [BR:
bna03009
]
106353540
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106353540
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 related factors
106353540
Complex B
106353540
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106353540
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106353540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
FtsK_SpoIIIE
AAA_30
AAA_7
Flavi_DEAD
T2SSE
NACHT
UvrD-helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
106353540
NCBI-ProteinID:
XP_013648758
LinkDB
All DBs
Position
A7:20068697..20071547
Genome browser
AA seq
670 aa
AA seq
DB search
MEMNKWSGKAYSQRYYEILEKRKSLPVYAQKQEFLQCLMSNQTLILVGETGSGKTTQIPQ
FVLEAVHEKHPSKWLVGCTQPRRVAAMSVASRVAEEMDVAIGEEVGYSVRFEDCTSSKTV
LTYLTDGMLMREAMTDPLLQRYKVIVLDEAHERTLATDLLFGVLKRVLSNRPDLKLVVMS
ATLEAEKCLEYFRGAPLMKVPGRLHPVEILYTQEPERDYLDAAIRTVVQIHMSEPPGDVL
VFLTGEEEIEDACRKIVCELGDQVNVVPLYSSLPPAMQQKIFDPPTENVRKIVVSTNIAE
TSLTIDGVVYVVDPGFAKQKLYNPETRVESLLVSAISQASANQRAGRAGRTRPGKCFRLY
TEKSFNHDLIEQTYPEILRSNLANTVLTLKKLGIDNLVCFDYMDPPAPVTMGRALNDLLD
LGALDEELNLTRTGEMMSEFPLDPQMAKMLIVSPKFNCSNEILSISAMLSVPNCFIRPRG
EAQKAADEARARFGHTDGDHLTLLNVYHDYKQNNGDSNWCYQNFINHKAMKSADNVREQL
VRIMSRFNLKTCSSDFTSRDYYINIRKALLAGYFMQVAHLDRTGHYLTAKDGQMVHLHPS
CCLDHKPEWVVYNEYVLTSRNFIRTVTYIRGEWLVDVAPDYYHLSDFPNCEAKRVLQKLS
KKRDRAGNPK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggagatgaataaatggagtggaaaagcttatagtcagaggtattacgagattcttgag
aaacggaagagcctacctgtgtatgcgcagaaacaagagtttctacaatgcttgatgagc
aaccagacgttgatacttgtcggtgaaaccggtagtggtaagactacgcagatcccacag
tttgttttggaagccgtgcacgaaaaacaccctagcaagtggctggtcgggtgcacacag
cctcgtagagtcgcagccatgtccgtggcaagtcgtgttgctgaagagatggatgtagct
atcggtgaagaagtcggttactccgttcgctttgaggattgcactagctccaaaacagtg
cttacgtacttgaccgatggtatgcttatgagagaagcaatgaccgatccgcttctacag
agatataaagtgatagtcctcgatgaagcccatgaaagaactttagccacggatttacta
tttggtgttctcaaacgagtcttgagcaacagaccggaccttaagctagttgtgatgagt
gcaactttggaagctgaaaagtgtcttgagtattttagaggtgcacctcttatgaaagtt
ccgggaaggctccatcccgtagagatcttgtacacgcaagaacctgagagagactatctt
gacgcggctattcggacagttgttcagattcacatgtccgagccgcccggtgatgttctt
gttttcttaaccggcgaggaggagattgaagatgcatgcagaaaaatcgtctgtgaactt
ggggatcaagtaaacgttgtgcctttgtattcttctcttccaccagccatgcagcagaag
atatttgatcctcctacggagaatgtgaggaagattgttgtatccaccaacatcgcagag
acttctttaaccatcgatggagttgtttacgtggttgatcctggcttcgctaagcagaaa
ctatacaaccctgaaactcgtgttgagtcgttgttggtgtctgcaatatcacaagcaagt
gctaaccagagagctggtcgtgcaggtagaacacggcctgggaaatgtttcaggctttac
acagagaagagtttcaaccatgatttgattgagcagacgtatcctgagatactgagatca
aaccttgcaaacactgttctgactttgaaaaaacttggtatagataacttggtttgcttc
gactatatggaccctcctgctcctgtgacgatggggcgggccttgaacgatttgcttgat
ctgggagcattagatgaagaacttaacttgacaaggacgggtgagatgatgagtgagttt
cctttggatccacagatggcaaagatgcttatagtcagtcctaaattcaactgctccaac
gagattctctcaatttcagctatgttatcagtaccaaactgctttataaggccaagagga
gaggcgcaaaaagcagcagatgaagctagagctaggtttggtcacactgatggagatcac
ctcacgttgctgaatgtgtaccatgattataaacaaaacaacggagactcgaactggtgc
taccagaacttcatcaaccataaggcaatgaagtctgctgacaatgttagagagcagttg
gtgaggataatgtccaggtttaatctcaagacgtgtagctctgattttaccagccgtgac
tactatattaacataagaaaggcattgcttgctggctatttcatgcaagtggctcattta
gaccgcacgggccactacttgaccgccaaagatggacaaatggttcacctgcatccatcg
tgttgcttggatcacaaaccggagtgggtagtctacaatgaatatgttctgactagtcgt
aatttcataaggactgtcacgtatattcgaggtgaatggctagtggatgttgcaccagat
tactatcatctttccgacttcccaaactgtgaagccaaacgagtcctccagaagctttct
aagaagagagacagagcggggaacccaaagtga
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