Brassica napus (rape): 106355731
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Entry
106355731 CDS
T04128
Name
(RefSeq) endoribonuclease Dicer homolog 3 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106355731
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106355731
microRNA pathway
RISC loading complex
106355731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
DEAD
Helicase_C
ResIII
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
106355731
NCBI-ProteinID:
XP_048607184
LinkDB
All DBs
Position
C3:complement(46622300..46629308)
Genome browser
AA seq
1544 aa
AA seq
DB search
MEGDEPRGGGAGSDSLSVKRKFSEIDDDSSPMNGSSEWKVYEVAQTRNSIAVLETGIDKF
GVINLLIKPMPSSDSPKRFIICLAPTVILVKQHCCEIREHVNLKVEDYYGAKGVDKWTSH
RWEEELSKNEVLVMTPQIFLDALRGGFLKVEMVRLLVIDECHRTTGNHPYAMIMKEFYHK
ATDKPRMFGLTTTAAIRKDQVSELENLMDSQIFNPQGKKGMDKFGTNVKEGPVFYDPPPL
CRLELKDKLRTSHLKFDASLLSLLQEMEKGNCQDVEENKFKAYQKRLSNDYHDILHCLHS
LGLICAHLAAEICLEKILETETYNECSMVCKEFLSDVLSTLGLFLQQEEKDPVDLQQDNP
SAVISELVSPKLQELFHLLDSLRGEMQKPCLIIVERIITAEVIERYLKKQASLGYLYVLY
LVGDNASTHALAQKMQDSFHVGKVNLVFIADVVEEGFHMPDCSCMVCFDLPKTVCSYSQS
QELAEQSNSKSIMFLERGNPSQRDHLYDLMRRQVPKETPNRRLCPPPEANGQDVKENGTT
VIPDPNTTVHDEPAPKEQSANKRLCQLQVLDKNLLQCSAKEKAASSKSKSSSSAAGSKKR
KELHGTTRANALSGIWGENLDGAIFQAYKLDFWSNISGDAYSSFSLLIESTLADDVGNVE
MGLYLVRKYIKASVSPSGQIRLSQEEMVKAKCFQQFFFNGMFGKLFVGSKSLGTKREFLL
QTDTSSLWHPSFMFLMLPVETSDLVSSATVDWSAINSCACVVDFLKKNSLLELQVGEENH
CNTSSGQEGTQKKDTETNLIHFANASSDKNSIEEIVVIAIHTGRIYSIVEAVKDSSAMSP
FEDEASLEYATYAEYFNKKYGIVLAHPNQPLLKLKQSHHAHNLLVNFNDEVIEKKEPKVG
IVRKTKPNIHAHLPPELLVRIDVPRSVIKSIYLLPSVMHRLESLTLASQLREEIGCSIDN
FSISSTSVLEALTTLTSAEAFSMERLELLGDSVLKYVVSCSLYLKYPNKDEGQLSRERQS
IISNSNLHRLATDRKLQGYIRNGAFEPRRWTAPGQCSLFPVPCKCGIDSREVPLEPRFFT
ENMTIKIGKSCDMGHRWTVSKSVSDCAEALIGAYYVSGGLTAALHMMKWLGLDVEFDREL
VNEAINRVSLRCYIPKDDELTELETKIRREFSSKFLLKEAITHSSVHESYSYERLEFLGD
SVLDFLITRHLFNTYEKTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQL
KEYLKSFSKPDETGRTIPSIQGPKALGDMVESIAGALLIDTRLDLEEVWKVFEPLLSPLV
TPDKLQLPPFRELNELCDSLGYFFRVKCANDGVKAQAMIQLQLDDILLTGDGSEQTNKLA
LGKAASHLLKQLEMRNISRKTGNGDDQSSMDIKLACNLSDRETPSSDSVEMQGTVVPVIG
PINMKKGGPRGTLHEFCKKHLWPMPTFDTLEDKSRTPFEFTDGNEKRTSFSSFISTITLR
IPNREAVMYSGEARPDKKSSFDSAVVELLYELERRMILTIKKVK
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagacgaacctcgtggaggaggagcaggaagcgattctctttctgtcaagagg
aaattctctgaaatcgatgacgattcttctcctatgaacggcagttccgagtggaaggtg
tacgaggttgcacagaccaggaacagtattgctgttctggagacaggaattgataagttt
ggggtaatcaacttgcttataaaacccatgccttcttctgattcccccaaaagattcatc
atttgcttggcccctactgtcattctcgtcaaacagcattgctgtgagattagagaacat
gtaaatctgaaggttgaagactactatggagctaaaggagttgataagtggacatcacac
cgctgggaagaggaactttccaagaacgaggttctagttatgactcctcaaatatttcta
gatgcccttagaggtggattcctgaaagtagagatggtacgccttctagtaatagatgaa
tgccaccgcaccactggcaatcatccttatgcaatgattatgaaggagttctatcacaaa
gctacagacaaaccgaggatgtttggattgactacgacagccgccattagaaaagatcaa
gtatcagaactggagaacctcatggactcgcagatttttaatcctcaagggaagaaaggg
atggacaagtttggtacaaatgtgaaagaaggtccagtattttatgacccaccaccttta
tgccgtctggaactgaaagataagttgcgaacttcacacctcaagtttgatgcttctctg
ttaagtcttcttcaagaaatggaaaaaggcaattgtcaggacgtggaggagaataagttt
aaggcatatcaaaagcgattgtccaatgactaccacgatattttgcattgccttcatagt
cttggcctcatttgcgcacatttggcagctgaaatctgcttggagaaaatcttggaaacc
gaaacttacaacgaatgctcaatggtgtgcaaggagtttcttagtgatgttttatccaca
cttgggctgtttttgcagcaagaagaaaaggatccggtagatttgcagcaagacaatccg
tcagcagtgatttcggaacttgtatctccgaagttacaagaacttttccatctattggat
tcattgagaggtgaaatgcaaaagccatgccttattatagttgagagaatcataactgca
gaagtgatcgaaagatacttgaagaaacaagcctctttaggttacctttacgtcttatac
ttagtcggagacaacgcctctacccatgcattggcacagaaaatgcaagattcatttcat
gttggcaaggtaaatcttgtatttatcgctgacgtggtcgaagaagggtttcacatgcca
gattgctcatgcatggtatgttttgacctgcccaaaacagtgtgtagttactcacagtct
caagaactggccgaacagagtaactctaagtctattatgtttcttgaaagggggaacccg
agccaaagagatcatctgtatgaccttatgcgaagacaagtaccaaaagaaactccaaac
cggagattgtgtccacctccggaagcgaatggtcaggacgtgaaagagaacggaaccacg
gttattccagatcctaacaccactgttcatgatgaaccagcgccaaaagagcagtcggct
aataaaaggttatgtcaactgcaagtgttggataagaatctgctacaatgcagcgccaaa
gagaaggccgcctcttctaaaagtaaatcatcttcgtcggctgcaggttccaaaaagcgg
aaggagttgcacgggacaacccgtgcaaacgcattgtcaggaatctggggagaaaatctt
gatggcgccatctttcaggcttataaattggacttctggagtaatatctctggggacgcg
tactctagtttctctcttctgatagagtcaacccttgccgatgatgttggtaatgtcgag
atgggcctttacttggtcagaaagtatataaaggcttctgtttcacctagtggccagata
cgtttgagtcaagaagagatggtcaaagcaaagtgttttcagcaatttttcttcaatggc
atgttcggaaagttgtttgttggatccaagtcactgggaacaaaaagagaatttctgctt
caaactgacacaagttctctttggcatccttccttcatgtttttaatgctaccggttgag
accagtgatctagtttcgagtgcaacggttgattggtcagcgatcaattcctgtgcctgt
gtagttgatttcttgaagaaaaattcccttttagaacttcaggttggtgaagaaaatcat
tgcaacacctcatccggtcaggaagggacacaaaagaaagacacggaaacgaatctgatt
cattttgccaacgcttcgtctgataaaaatagcatcgaagaaattgtggtcattgcgatt
cacaccggaaggatatactctatagtggaagcggtcaaagattcttctgctatgagcccg
tttgaggacgaggcctcattagaatatgctacttatgcagaatattttaataaaaagtat
gggattgttttggcgcacccaaaccagccattgttgaagttgaagcagagtcaccatgcg
cacaacctcttagtcaacttcaatgacgaagtgattgagaagaaagaaccaaaagttggt
attgttagaaaaacaaaacccaacatccacgctcatttgcctccggagctcttggtcaga
attgacgtaccacgttctgtgataaaatcaatctacttattaccatcagtgatgcaccgc
ctagagtctctaacgttggccagccaacttagagaagagattggttgtagcatcgataac
ttcagtatatctagtacatcggttcttgaagcacttacaacacttacatccgctgaagcg
ttttccatggaacgtttggaattgcttggggattcagtcttgaagtatgttgtgagttgt
tctctataccttaagtatcctaacaaagacgagggacaactttcacgtgagaggcaatcg
attatatctaactcgaatcttcaccgcttggctacagatcgcaaactacagggatacata
agaaacggtgcctttgaaccgcgtcggtggaccgcacctggtcaatgttctctctttccc
gttccttgcaagtgtgggattgatagtagagaagtaccgttggagccaagattctttaca
gagaacatgactataaaaattggcaagtcttgtgacatgggtcatagatggacggtttca
aaatctgtatcagattgcgctgaggccctgattggtgcctattatgtcagcggtggattg
actgcggctcttcacatgatgaaatggcttggccttgacgttgaatttgacagagaacta
gtgaatgaagccatcaatagagtttctctacggtgttacatccctaaagacgatgagctt
acggagttggagacaaagatccgacgtgaattctcttcaaagttccttttgaaagaggct
atcacacactcatctgttcatgaatcctactcctacgagagattggagtttcttggcgat
tccgttctggattttctaatcacccgacatctctttaacacctacgaaaagacggggcct
ggagagatgacagatcttcgttctgcatgtgtaaacaacgaaaatttcgcgcaagttgcg
gtgaaaaataatctgcatacccaccttcaacgctgtgctacggttcttgagactcaacta
aaagagtatctgaagtctttttcaaagccagatgagactggtagaacaatcccttcaata
caaggccctaaggctcttggggacatggtggagagtatcgctggagcattgctgatcgat
acaaggttagatcttgaagaagtgtggaaagtctttgagccgttgctttctccacttgtg
acacctgataaacttcagcttcctccattccgagagctcaatgagctgtgcgactctctc
gggtatttcttccgtgtgaaatgcgcaaatgatggtgtgaaggcacaagccatgatccag
ttacagctggacgatattcttttgactggagatggatctgaacagacaaataaactggca
ctgggaaaagcagcttcccatctgcttaagcaacttgagatgagaaacatttcacgtaaa
actgggaacggggatgatcaaagctccatggatattaaacttgcttgcaatcttagcgac
agagaaactccgtcttcagattctgtcgaaatgcagggcacagtggttccagttattggg
cctataaacatgaagaaaggagggccccgtggaacattacatgagttctgcaagaagcat
ctctggccaatgcctactttcgacactttggaagacaagtctcgaactccctttgaattc
acagatggcaatgagaagcggactagcttcagcagtttcatatcgaccataaccctgagg
atacctaatcgtgaggctgtgatgtattctggagaagccaggcctgacaaaaagagttcc
ttcgactctgcagtcgtggaactgctctatgagctcgagcgccgcatgatcctgactata
aaaaaagtaaaataa
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integrated database retrieval system
