Brassica napus (rape): 106357287
Help
Entry
106357287 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106357287
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106357287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106357287
NCBI-ProteinID:
XP_013652423
UniProt:
A0A816WEW6
LinkDB
All DBs
Position
C2:complement(3132995..3135130)
Genome browser
AA seq
428 aa
AA seq
DB search
MNKSLLFFVFLCLLIQISKLGFCLERKAHNGNNGLKRHGFISVTSFGAVGDGKADDTKAF
LKAWKAVCKGGSRGKTNFVVPLGKTFMLKPLTFEGPCKSSSITFLIRGNLVAPGYTWHAG
NYPAWISFDSIYGLAITGGGTINGRGSVWWRNVQHRPTAMHFNNCNGLHISNLHHLNSPR
NHISLSCSENISLSGLNMTAPGDSPNTDGIDISNCRGVDIRDSVIATGDDCIAINGGSSY
INITGIFCGPGHGISVGSLGQNGHFSAVEEVRVKNCTLSNTKNGVRIKTFQNGLGFARKI
SFEDIKMVASENPIIIEQNYHDQGKNGDVSFEYSNHQSCHVNRLYQTESGSGNGRGVRVS
DVRYSRIQGSSASSEAITMNCDANLGCVDIVMDHVNIVSAKSGHKVSASCKNVHGKYFDS
VISCQKKH
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatctttgttgttcttcgtctttttatgcttgcttattcaaataagcaaatta
ggtttctgcttagaaagaaaagctcataatggtaataatggactgaaacgccatggattc
ataagtgtcactagcttcggagctgttggcgatgggaaggctgatgatactaaggcattt
cttaaggcgtggaaagctgtatgtaagggaggaagtagagggaagacaaattttgtagtg
cctctaggaaaaacgttcatgcttaagcctcttacattcgaaggtccctgcaagtcttcc
tccatcacctttttgataagaggcaatcttgttgcgccgggttacacttggcatgcggga
aactaccctgcatggataagttttgatagtatatacggcctagctatcaccggaggcggc
accatcaacggccgtggttctgtgtggtggagaaacgttcagcatcgtcccacagcaatg
catttcaacaactgtaatggtcttcacatctctaatctccatcacttgaacagtcctcgt
aaccacataagtctaagctgctcagagaacatcagcctctcgggtctaaacatgactgcg
cctggtgatagtcctaatacggatggtatagacatatcaaactgtagaggagtcgacata
cgtgactctgtgattgccactggggatgactgcattgccattaacggaggttcatcttat
atcaacataaccggcattttttgcggccccggtcatggcatcagcgtaggaagccttgga
caaaatggacatttttcagccgttgaagaggtgagagtaaagaactgtactttgtcaaac
acaaagaacggtgtccggatcaagacattccagaatggattaggattcgctcggaaaatc
tcatttgaggatattaaaatggtggcttcagagaaccctataatcatcgaacagaactac
cacgaccagggcaagaacggagacgtaagctttgaatacagtaaccaccaaagctgtcat
gtaaatcgcttgtaccagaccgagtctggttctggcaatggcagaggcgtgagagtgagc
gatgtgcgttacagtagaatacaaggttcatccgcgagtagtgaagccatcacaatgaac
tgcgatgcgaacttgggatgtgtggatattgtgatggaccatgtgaatatcgtttcggct
aaatcaggtcacaaggtgtctgcttcttgcaagaatgttcatgggaagtactttgattcc
gttattagctgtcagaaaaagcattag
DBGET
integrated database retrieval system
