Brassica napus (rape): 106357504
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Entry
106357504 CDS
T04128
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106357504
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106357504
Spliceosome [BR:
bna03041
]
Complex C
Other components
Complex C specific factors
106357504
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
ResIII
AAA_7
nSTAND3
T2SSE
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
106357504
NCBI-ProteinID:
XP_048638331
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All DBs
Position
A1:5101989..5106819
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AA seq
695 aa
AA seq
DB search
MAFWKPGTEKPSFVEDEEGGIVLMSNNLSSSSSSSFGYANIEKQRQRLPVYKYRTEILYL
VENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVSARVADEIGV
KLGDEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKAMFNFFNTSKKRQAPEGSAQGPNLEPAILSVE
GRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQDDIETTIKLLAEEAH
SNQKNSSGLLPLPLYSGLSRTEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSG
FSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLKEMPGEGIP
EMQRSNLVSTVIQLKALGIDNILGFDWPSPPSPQAMIRALEVLYSLQILDDDAKLTSPTG
FQVAELPLDPMISKMILASNELGCSDEIITIAAVLSIQSVWVIARGVQKEQDEAKLRFAA
AEGDHVTFLNVYKGFLESKKSSQWCYKNFLNYQSMKKVVEIRDQLKRIARRLGITLKSCE
GDIDAVRKAVTAGFFANACRLEPHSNGVFKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIV
STERQYMRNVVTINPSWLTEAAPHFYQNRQNNISL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttggaagccaggaacggagaagccaagcttcgtcgaggatgaagaaggaggc
atagtgctcatgtccaacaatctctcatcctcttcttcttctagttttgggtatgcgaat
atagagaagcagaggcagagattgccagtgtacaagtacaggactgagattctgtatttg
gtggagaatcacgctaccaccatcatcgttggtgagacgggaagtggcaaaaccacccag
attcctcagtatcttaaagaagctggatgggctgaaggaggtcgagttattgcttgcaca
cagccaaggcgtttagctgtccagtcggtgtctgcgagggtggcagacgagattggggtg
aaacttggggatgaagttggctacactattcgatttgaagatcatacaacttcaggtgtg
actagtgtgaaatttctcaccgatggagtacttatccgagagatgatggaggatcctctc
ttgacaaagtatagtgttataatggtagatgaagctcatgagagatctatctcaaccgac
attttactaggactcttaaaaaagatacaacgtcgtcgtcctgagctgcgtcttattatc
tcatcagccacaatcgaagcaaaagcaatgttcaatttcttcaataccagtaaaaaacgc
caagcgccagaaggtagtgcccaaggaccaaacttggaacctgcaatcttatctgtcgag
ggcagaggcttcagtgtaaaaattcactatgttgaggagcctgtttcagattatattaga
tcggttgtttcaacgattttgttgattaacgaacgggagccacctggggatgttcttgta
tttctgacaggtcaagatgatattgaaactactattaaacttcttgcagaagaagctcat
agcaatcaaaagaattcttcaggactgctccctctgccactatattcaggactttcacga
acagaacaggaactgatctttactcctactcccagaggaaaaagaaaagttatactctca
acaaatattgccgaaacatctttgactctggagggagttgtctatgtgattgatagtggt
ttctcaaagcagaaattctataacccgatttcagatatcgaaagtcttgtggtggcacca
atatccaaagcatctgctagacaaaggtctggtagggctgggcgagttcggcctggaaag
tgttacaggctttacaccgaagattattttctcaaggaaatgcctggagaaggcataccg
gagatgcagaggtcgaatcttgtttcaactgtgatacagctaaaagctttgggcatagat
aatatattgggtttcgattggccttcacctccatccccacaagcaatgatacgggcactt
gaagtactttattcacttcaaatcctcgatgatgatgcaaaactcacttctccaacagga
ttccaagtagctgaacttccactggacccaatgatatcaaaaatgatcttagcttcaaat
gagcttggttgttcagatgagatcattacaatcgctgcagttctgtctatccaatctgtt
tgggtcattgccaggggagtacagaaagaacaagatgaagcaaaactgagatttgctgct
gcagagggtgaccatgtcacatttttgaatgtatacaaagggttccttgagtcgaaaaag
tcttcacagtggtgctacaagaatttcctcaactatcaatccatgaagaaagtggttgaa
atcagggatcaactcaaacggattgctcggagattaggcatcaccctgaaatcatgtgaa
ggagacatagatgctgtgagaaaagcagtgactgcagggtttttcgccaatgcatgccgc
ttagaaccacacagcaatggagtattcaagaccattagaggctctgaagaagtttatatc
cacccatcgtccgtattgttcagggtgaatccgaaatgggtggtttaccagtccattgtc
tcaacagagcgtcaatacatgcggaatgtcgtcaccatcaatccttcttggctgacagaa
gctgctccacacttttaccagaaccgccaaaacaatatctccttgtaa
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