Brassica napus (rape): 106358331
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Entry
106358331 CDS
T04128
Name
(RefSeq) polyadenylate-binding protein 2 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106358331
09123 Folding, sorting and degradation
03018 RNA degradation
106358331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106358331
03041 Spliceosome [BR:
bna03041
]
106358331
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106358331
mRNA cycle factors
Stress granule specific factors
106358331
Spliceosome [BR:
bna03041
]
Complex C
Other components
Complex C specific factors
106358331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_Nup35
RRM_occluded
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
106358331
NCBI-ProteinID:
XP_013653579
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All DBs
Position
A1:complement(2144548..2148550)
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AA seq
612 aa
AA seq
DB search
MAQVQTTVAPATHFGTTSLYVGDLDLNVTDSQLFEAFSQMGQVVSVRVCRDSPTRRSLGY
GYVNFTNPPDAARAIQELNYIPLYGKPIRVMYSHRDPSVRLSGAGNIFIKNLDQSIDHKA
LHDTFSTFGNIVSCKVAVDASGQSKGYGFVQYADEESAQKAIEKLNGMLLNDKQVYVGPF
LRKQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFAEYGEITSAVVMKDGEGGKSKGFG
FVNFENADDAAKAVESLNGKMFDDKEWYVGRAQKKSERETELRVRREESLREAAERFQSS
NLYVKNLDSSVSDETLKEMFSPFGTVTSCKVMCDPNGINKGSGFVAFSTPEEATEAMSQM
SGKMVEGKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMPPSAGPRMPMFPPGIGQQMFYGQ
APPNMIPPQPGYGYQQQLVPGMRPGGRGPVPNYFMPMVQQQQRIGGGGRRPGGIQQSQHQ
VPMMQQHQMHPRGRMLRYSQGRGSGGDVAPYDMGNNNNITMPIGALASNLANASPEQQRT
MLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPEALKDKVAEAMDVLRSVAAG
GAAEQLASLNLS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcagacaacggtggccccggcaactcatttcggaacgacgtcgctttac
gtaggtgatctggatctcaacgtgacggactcgcagctcttcgaagcctttagccaaatg
ggccaagtggtgtctgttcgagtctgcagagactcacccactcgcagatccctcggctat
ggttatgttaacttcaccaatccaccagatgctgcaagagcaatccaggaactcaattac
atacctctctatgggaaacctataagggttatgtattctcatcgtgatcctagtgttcgc
ctcagtggcgctggtaacattttcatcaagaatctggaccagtccatcgaccacaaagca
ctacacgatacattttcaaccttcgggaacatcgtgtcgtgcaaggtagccgtggatgct
tcaggccagtcaaaaggctacggcttcgtgcaatacgccgacgaagagtctgctcagaaa
gccattgagaaactcaacggcatgttgctaaacgacaagcaagtgtacgttggtccgttc
cttagaaaacaagaaagagactccaccgcaaacaaaactaaattcaccaacgtctacgtg
aagaatctcgcggagagtactacagatgatgacttgaagaacgctttcgcggagtatggt
gagataacgagcgctgtggtgatgaaagatggagaaggagggaagtctaaggggtttggt
tttgtcaacttcgaaaacgctgatgatgctgccaaggctgtggagtctttgaatgggaag
atgtttgatgataaggagtggtatgttggtagagcgcagaagaagtctgagagggagacg
gagctaagggttcgtcgtgaagagagtttgagggaagctgcggagaggtttcagagttcg
aatttgtatgtgaagaatttggattctagcgtttctgatgagacactcaaagagatgttt
tctccttttggtaccgttacatcttgcaaggtgatgtgtgatcctaatggaataaacaaa
gggtctggctttgttgctttctcaactcctgaagaagcaacagaagctatgtcacagatg
agtgggaaaatggtggaaggcaagccactctatgttgctattgcacagaggaaggaagac
agaagggtcagactacaggctcagttttctcaagtgaggccagttgcaatgccgccatcc
gctggtcctcgcatgccaatgtttccccctggtattggacaacaaatgttctacggtcag
gcccctcctaacatgattcctcctcagcctgggtatggataccaacagcagcttgttcct
ggaatgagacctggtggtaggggacctgtacccaattacttcatgcctatggttcagcaa
cagcagcgtattggaggaggaggaagacgccctggagggatccaacagtcccagcaccaa
gttcccatgatgcagcagcaccagatgcatccaaggggtcggatgttacggtattctcaa
gggcgtggcagtggtggtgatgtagctccatatgacatgggcaacaacaacaacatcaca
atgcctattggagctttggcttcaaatctggctaacgcgtctccagagcagcagaggacg
atgctgggtgagaatctgtacccgttggtggagcagcttgaagcagagtctgcagccaaa
gtgactgggatgcttttggagatggaccagacggaagtgctccatctcttggagtcgcca
gaagctctcaaggacaaagttgcagaggctatggatgttctcaggagcgtcgctgctggt
ggtgcagccgagcagctcgcttccttgaacctctcgtaa
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