Brassica napus (rape): 106358514
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Entry
106358514 CDS
T04128
Name
(RefSeq) diaminopimelate decarboxylase 2, chloroplastic
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
bna
Brassica napus (rape)
Pathway
bna00300
Lysine biosynthesis
bna00470
D-Amino acid metabolism
bna01100
Metabolic pathways
bna01110
Biosynthesis of secondary metabolites
bna01230
Biosynthesis of amino acids
Module
bna_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
106358514
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
106358514
Enzymes [BR:
bna01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
106358514
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-GeneID:
106358514
NCBI-ProteinID:
XP_013653782
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Position
C3:complement(2662740..2665518)
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AA seq
493 aa
AA seq
DB search
MASATHLLSQPSSSLRRNLNQYQSNRSPLSRIPVLSLKSTLKPLQRLSVKAAASSPNSVK
TVTKESSDQSSFNHCFKKSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNVEAYKE
ALEGVSSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK
LLEDLVIAAQAGVFVNVDSEFDLDNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNK
NSKFGIRNEKLQWFLDEVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVEYIDEIRR
QGFEVSYLNIGGGLGIDYYHAGAILPTPMDLINTVRELVLSRGLNLIIEPGRSLIANTCC
FVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVSKFDVVGPVC
ESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSITKIRHA
ETFEDHLRFFEGL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagctactcacctcctctcccaaccttcatcatctctccgaagaaacctaaac
caataccaatcgaaccgatctcccctctccagaatcccggtcctgtctctcaagtcaacc
ttgaagccactgcaacgcctctccgtcaaagccgccgcatcatccccaaactctgtaaaa
accgtgacgaaggaatcaagcgatcagtcttccttcaaccactgtttcaagaaatcatca
gatgggttcctctactgcgagggaaccaaggtcgaggacatcatggagagcgtggagaga
agacctttttacttgtacagcaagcctcagatcacgaggaacgtcgaggcgtacaaagag
gccttggaaggtgtgagctccgtcattggctacgccatcaaggctaataacaacctcaag
attctggagcatttgaggagtttgggatgtggtgctgtgcttgttagtgggaatgagctc
aggcttgctcttcgtgctggtttcgatcccacaaagtgtatcttcaatggaaatgggaag
ctgttggaggatttagttatagctgctcaggcaggtgttttcgtgaacgtggatagtgag
ttcgacttggataatattgtggaagcttcaagaatctccggtaaacaggtcaatgttcta
ctgcgtatcaatcctgatgttgatcctcaggtgcatccatacgtagctaccgggaacaag
aactcaaagtttggtatcaggaacgagaagcttcagtggtttctcgacgaggtgaaggcg
catcctaatgagctcaagcttgttggagctcattgccatctaggctctaccattacaaag
gtggatatattcagagatgctgcggttctcatggtggaatacattgatgagatcaggcgt
caaggctttgaagttagctacttgaacattggtggtggcttagggatagattattaccat
gcaggagctatccttcctacacccatggatctcatcaacaccgtgagagagcttgttctg
tcacgtggactgaatctaataatagagccagggaggtcgctgattgcaaacacgtgctgt
ttcgtcaaccatgtgactggagtgaagacgaatggaactaaaaactttatagtgatcgat
ggaagtatggctgagctaatccgtcctagtctttatgatgcatatcagcatattgagttg
gtctctcctacaccgcctgaagcagaggtttccaagttcgatgtagtgggtcctgtttgt
gaatctgctgatttcttgggcaaagatagagagcttcctactcctccgaagggagctggt
ctggtggttcatgatgctggtgcatactgtatgagcatggcttccacttacaatctcaag
atgcgtcctccggaatactgggttgaagatgatgggtcgatcactaagatcaggcacgct
gagacattcgaagaccatttgcgtttctttgaaggtctataa
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