Brassica napus (rape): 106358959
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Entry
106358959 CDS
T04128
Name
(RefSeq) probable E3 ubiquitin ligase SUD1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Pathway
bna04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106358959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106358959
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106358959
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
106358959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
Motif
Other DBs
NCBI-GeneID:
106358959
NCBI-ProteinID:
XP_048605896
LinkDB
All DBs
Position
C3:complement(68035200..68037685)
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AA seq
648 aa
AA seq
DB search
MIFLGVVIFVPFTLGRFILYHVLCVFADARGPASVSNLTHEGQENGLVSHLLKCFVAGAG
PPKLYVATTCTDGHMFGDCLVFIYLGLIPLIQYLKGEPLTAGRFYGGVASIVETIPPLLR
QFYGGVVFVLMLGVVPLMCGWLLDVCTVKVFGKTMSHRVEFLSVSPLASSLVHWVVGLLY
LLKIIIFEELLQQVLRPGVLNFFYDPEYEDDTFQLFIEEPVHKLARNVLLDSAKLGSLIV
LLVFLPVKLAIRMAPSIFPLNISVSDPFTEIPAGMLLFTICTQFIIEHFRLWTAVESLVR
FWFTCVGWALGLTDFLLPRPEDNVGQDNGNGEPGRQNRGQSDSERYNFVLRIVLLLLAAW
ITLLLFNTTLIVVPVSVGRALFNAIPTLPITHGIIKYNDLYAYVIGTYAFWTTISGAMYT
IEHVKSKRTSRKEIWKWCEIVFKSSVLLAIWVFVIPVLIGLVFELLVIVPMRVPVDESPV
FLLYQDWPLGLIVLKIWSTLHVTKNDNNGQIILLDDSWKAKFERVEGDRFSRLQGLWVFR
EILFPIVMKLLTALCVPYVLARGVFPMLGYPLVVNSAVYRYAWIGCLSVSLVCFCANRCH
VWFRNLHNSIRDDRYLIGRRLHNFGEAVLAHQNQSSEDAGDGGVLTGR
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgatattccttggtgttgtcatctttgtgcccttcacactaggacggtttatattatat
catgtgttgtgtgtttttgctgatgctagaggccctgcttcggtctcaaatttgactcac
gagggacaagaaaatggactagtatctcatcttttgaaatgttttgttgctggagctgga
ccaccaaagctatacgttgctacaacttgcactgatgggcacatgtttggagactgtctt
gtgttcatttaccttggactcattcccttgattcaatacctcaagggtgagccactgacc
gctggaagattctacggtggtgttgcttcaatagtagaaacaataccacctctccttagg
cagttctatggtggtgtcgtgtttgtcttaatgcttggtgtcgtccccttgatgtgcggg
tggttgttagatgtttgcacggttaaggtgtttggtaaaacaatgtcccatagagtagag
tttttatcggtttctccactggcgagctcacttgttcactgggttgttggactattgtac
ttattgaaaataatcatatttgaggagcttcttcaacaggttcttcgccctggagttttg
aatttcttttatgatcccgaatatgaggatgacacattccagttatttattgaagaacca
gtgcacaagcttgctcgaaatgttttgttagattctgcaaagcttgggagtttgattgtc
ttgctggtgtttttgccagtcaaacttgcgatcaggatggcaccttcaatcttccctctt
aacatatctgtatccgacccattcactgagatccctgctggcatgctcctgttcaccata
tgcacacagtttatcatcgagcactttagactctggaccgctgttgagtcccttgtacgc
ttctggttcacctgtgttggctgggcgcttggtttgacagacttcctcttaccaagaccg
gaggacaacgttggccaggacaatggaaatggcgaaccaggaaggcagaacagaggacaa
tctgattcagagaggtacaactttgtgctccggatagtccttcttctacttgctgcatgg
attactcttcttctcttcaatacgacattgatagttgtaccagtttctgtaggacgtgct
ctatttaatgccataccaactctccctataacgcatggcatcatcaagtacaatgacctg
tatgcttacgtcattggcacatatgccttttggactaccatatctggggccatgtatact
atcgagcatgtcaagtcaaaaagaacttcaagaaaggaaatatggaaatggtgtgagatt
gttttcaagagctcggtgctgttagccatatgggtttttgtcattccggtactaatagga
cttgtgtttgagcttttggtgattgtcccaatgagagtcccggtagatgaaagccctgtc
ttcctcctgtatcaagactggcctcttgggctcatcgttttgaaaatctggtcaacattg
catgtcactaaaaatgacaacaatggacagataatattgctggatgatagttggaaagca
aagtttgagagagtagaaggagatagattctcaaggcttcaagggttatgggtatttaga
gaaattttattcccaatcgtgatgaaacttctgacagcattatgtgtgccttatgttctg
gcaagaggagtgttcccgatgctaggatatccactggttgtgaactcggccgtctacaga
tatgcttggataggttgtctctcggtgagtctcgtctgcttctgtgcaaatagatgccat
gtttggttcagaaaccttcacaactccatccgggacgaccgttacctcattggtcggagg
ctccataactttggggaagctgttttggctcaccaaaaccaaagcagtgaggatgcaggg
gatggtggtgtcttgacagggcgttag
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