Brassica napus (rape): 106359002
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Entry
106359002 CDS
T04128
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 2-like
KO
K03255
protein TIF31
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
bna03012
]
106359002
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106359002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
eIF3_p135
TPR_10
TPR_NPHP3
CLU_N
TPR_2
CLU
TPR_9
TPR_MalT
TPR_8
DUF5969
Motif
Other DBs
NCBI-GeneID:
106359002
NCBI-ProteinID:
XP_048593682
LinkDB
All DBs
Position
A8:15321557..15333474
Genome browser
AA seq
1760 aa
AA seq
DB search
MAPKAGKTKPHKSKGDKKKKEEKVLPVVIEISVETPDETQVTLKGISTDRILDVRKLLAV
HVQTCHFTNFSLSHQVRGARLKDSVDIVSLKPCQLTIVEEDYTEEQATAHIRRLLDIVAC
TTAFGSSKPPVSRASPKESGSNEDAGDSGSNLSPKSEKKLVVGGCEASPAAEVGDKGEIN
MSPPIRLGQFYEFISFSHLTPPIQYIRRSVRPSIEDKGVDDLFQIDVKVSSGKPITVVAS
RTGFFPAGKQQLLCHSLVELLQQISRPFDAAYDALMKAFIEHNKFANLPYGFRANTWVVP
PVVADSPSTFPSLPVEDVTWGGDGGGAGRSSKYDRRKWAMEFAVLAAMPCKTSEERQVRD
RKAFLLHSLFVDVSVSKAVEIIKNVVEGNQRLSKDPAVLAFHEERVGDLVIRVARDDPDA
SAKLDRKSDGTRVLEISQEELAQRNLLKGITADESATVHDTSTLGVVVVRHCGFTAIVKV
AAEFNLDGGRIPQDIDIEDQSDGGANALNVNSLRTLLHKSSTPSSTVQRSPNADSEQIRV
AKSLVRTVFEDSLQKLEAEPPRNTKPIRWELGACWVQHLANEASSKTESKNTEDAKPEPP
VKGLGKQGAMLKEIKRKIDVKSNKTEQGKDALANTVDNDSKSETEDQKELEKQNEEIDKM
WKELVTEAAYQRLKESETGFHLKSPRELIEMARKYYTDTALPKLVADFGSLELSPVDGRT
LTDFMHTRGLQMHSLGRVVELAEKLPHVQSLCIHEMIVRAYKHILQAVVAAVENTADLAI
SIASCLNVLLGTPSDTESEYDEKIKWTWIEAFISKRYGWDWKHEGFQELRKFAILRGLSH
KVGLELVPKDYEMDTSSPFKKLDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDA
VSYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD
HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL
GNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ
AKLGLEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPE
TDLKTRDAQRKARMKVKGRPGLSPTSVLEENQKDDEILTPTPITVESSSDKDIKSEAKPE
ETKVDERVMEPRDQVTLVKAESTAQEEDSSDEGWQEAVPKNRYPSGRRTRPSLAKLNTNF
TNANQQTSKSRGKPTNFASPRTSPNEISISTAGSTSQHAKKALKSPSLNKKKNSSNIVGE
KPVSNKSATEQINKPISMVSPVTVQAGKLFSYKEVALAPPGTIVKIVAEQLTEETTVPET
LDAAKVDGPEKVKAEEDESESKHEATETETKNADGNEQGGAAVGGSKLMSSQEDIKAEKA
GEEGSPTKTGVSDASQGISESVQTAKDSNGSGPVTELKQQKDVSDATAKAVDGETEALPN
GDLSPKSSVVADGEKQEALEAQKETSKKLSASAPPYTPTTIPIFGSITVPGFNDHVGILP
SPVNIPPMLPVNHVRRSTPHQSVTARVPYGPRLSGGGFNRSGNRVPRNKPSFPISPESNG
EAKQFIGPRIMNPHAAEFIPSQPWVSNGYPVSPNGYLVSPNGTEITQNGYPLSPVAGAYP
CNIPAQPQNGHIIPAPVALEEVHDTESAEEKSGGEEESNKENKAAEDEEVTAQETTETPE
NGQSAAGEEKPTAQEISDEN
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atggctcctaaagctgggaaaacaaagccacacaagagtaaaggagataagaagaagaag
gaagagaaagttttgcccgttgtcattgagataagtgttgaaacaccagacgaaactcaa
gtgactctcaagggaatctccacggacagaatcttagatgtgaggaagctcttagcagtc
catgttcagacatgccacttcaccaacttctctctctctcaccaggtgcgtggcgctaga
ctcaaggattctgttgacatcgtatcgctcaaaccctgccagctcaccatcgtcgaagag
gactatacggaggagcaagccaccgcgcacatacggcggctcctcgacatcgtcgcttgc
accaccgccttcggttcgtcgaaaccgccggtgtctcgcgcatctcctaaggaatcaggt
tcgaacgaggatgccggcgattcaggctccaatctcagccctaaatcggagaagaaactc
gtcgtcggaggctgtgaggcttccccggcggcggaagtcggggacaagggcgaaatcaac
atgtccccgccgattcgtctcgggcagttctacgagtttatctcgttctcccaccttact
ccaccgatccaatatatcagaaggtctgttcgtccatcgatcgaagataaaggagtagat
gatctattccaaatcgatgttaaagtttcaagtgggaagcctatcactgttgttgcttca
agaacaggttttttcccagctgggaagcagcagcttctgtgtcattctttggttgagttg
ctgcagcagataagcagaccatttgatgcggcttatgacgctctcatgaaagctttcatt
gagcataataaatttgccaaccttccttatggtttccgggcaaacacttgggtagttcct
ccggttgttgcagatagcccttctacttttccgtcacttccagtggaggatgtgacgtgg
ggaggagacggcggtggggcgggccggtctagtaagtatgaccgaagaaagtgggccatg
gaatttgcggttttggcagcaatgccgtgtaaaacgtccgaagagagacaggttcgagat
aggaaggcctttctactccacagtctattcgtcgatgtttcagtttccaaagcagtggaa
ataataaagaatgtcgtagagggtaatcaacgcttatcgaaggatcctgctgtgttggct
ttccatgaagaaagagtaggtgatttggtcataagggtggctagagatgatcctgatgcg
agtgccaagcttgatagaaagagtgatgggactcgggttctggagatctctcaggaagaa
cttgcacagaggaatttgcttaaagggatcactgctgatgagagtgcgacggttcatgat
acgtctaccttgggtgtggtggttgtcagacattgtggtttcacagccattgtaaaggtt
gctgctgagtttaacttggatgggggccgaatcccacaggatatagacatcgaagaccaa
tcagatggaggtgcaaatgcactgaatgtaaatagcttgagaactctactgcacaagtcg
tcaacgccttcgagcacagtgcagagatcaccaaatgccgactcagaacaaatacgtgtg
gcgaagtcccttgtgaggacagtatttgaggatagtctgcagaaattggaggctgaaccc
ccaagaaataccaagcctataaggtgggagttaggagcttgttgggtgcaacatctggca
aatgaagcttcaagtaaaactgagtctaagaacactgaagatgctaagcctgaaccacct
gttaagggtcttggaaagcaaggtgcaatgcttaaggagataaaaaggaagattgatgtg
aaatctaacaagactgaacagggcaaggatgcccttgctaacacggttgacaatgacagt
aaatcagaaactgaggatcagaaggaactcgagaaacaaaatgaggagattgacaagatg
tggaaagaactggtgacagaagctgcctatcagcgtcttaaggaatcagaaactggtttt
catcttaagtcacccagggagctgattgaaatggcccgtaaatactacactgacaccgct
cttccgaagctggtggcagactttggatctcttgaactttcaccagtcgatgggagaact
ctgacagactttatgcacaccagaggcttacaaatgcattccctggggagagtggttgag
ctggctgaaaagctccctcatgtgcaatccctttgtattcatgaaatgattgttcgggca
tacaagcatatactgcaggctgttgtagcagctgttgaaaacactgctgatttggccatc
tcaatagcatcatgcttaaacgttctattgggaacaccgtctgatactgaaagtgaatat
gatgagaagataaaatggacttggatagaagcgttcatttccaaaaggtatggatgggac
tggaagcatgaaggtttccaggaactgaggaaatttgccattctcagaggactgtcacac
aaggttggactggagcttgttcctaaggattatgagatggacacgtcaagtccatttaag
aagttagatatcattagtatggttcctgtatataagcacgtagcatgttcatccgccgat
ggacgcactttattggaatcatccaaaacttccttagataaaggcaaactggaggatgct
gtcagttatggtaccaaggcattggcgaagcttgtagcagtgtgcggcccatatcataga
atgactgccggagcatatagtcttcttgctgttgtcctgtaccatactggggactttaac
caggctactatttatcagcaaaaagcactcgacataaatgaaagggaacttggacttgat
catccagacacaatgaaaagctacggcgacctggccgtcttctattatcgtcttcagcac
acagagttagctttgaagtatgtcaaccgtgcattgtaccttctgcatctaacatgtgga
ccgtcacatccaaatactgctgccacttatattaatgtagcgatgatggaagaaggtttg
gggaatgtccatgtggctttaagataccttcatgaagcgttgaaatgtaaccagagacta
cttggagctgatcatatccagactgctgcaagttaccatgccattgctattgctctttct
ctgatggaagcatactccttgagcgtccaacatgagcagaccactctacagattctacaa
gcaaaattaggccttgaggatcttcggacacaggatgcggctgcgtggcttgagtatttt
gagtctaaagctctggaacaacaagaagctgcacgaaatggtactcccaagccagacgcc
tctatttccagcaaaggccatctcagtgtatcagacctgctggattatataaccccggag
actgatctcaaaacaagggacgcccaaaggaaagctcgcatgaaggtcaagggaagacca
ggactaagtccaacatctgtgttggaagaaaatcagaaagatgatgaaattctgactccg
actcctatcactgtggagagttcaagtgataaagacattaagtccgaagcaaaacctgaa
gaaacaaaggttgatgaacgtgttatggaacctcgagatcaggtgacgctggttaaggca
gagtccacagcccaagaggaggactcctctgacgaaggatggcaagaagctgtcccgaaa
aatcgctatccttctgggcgtagaacccgtcccagcctggcaaagctgaacacaaacttc
acgaacgcgaaccagcagacatcaaaaagcagaggaaaacccaccaatttcgcgtcccca
aggactagcccaaatgagatttcaatatctactgctggttctacttcccagcacgccaag
aaggctttgaagagcccgagtttgaataaaaagaaaaacagttccaatatagtgggagaa
aagccagttagcaataaatcagccaccgaacagatcaacaagccgatttctatggtgagt
cctgtgactgtccaagctggaaaactgttttcctataaggaggttgcactggcaccccct
ggaacaattgtgaaaatagttgcggagcagttgacagaagaaacgactgtcccagagact
ttggacgcggcaaaagtagatggtcctgaaaaagttaaggctgaggaggatgagagtgag
agtaagcatgaggctaccgaaacggaaacgaaaaatgctgatggcaatgaacaaggagga
gctgcggttggtggatcaaagttgatgagttcacaagaggatatcaaggctgaaaaggca
ggagaagaaggatctccaacaaagacgggggtttcagatgcaagtcaaggaatatctgaa
agtgtacaaacagcaaaagattcaaatggaagtggaccagtaacagaactgaagcaacag
aaggatgtgtctgatgctactgctaaagcagtagatggtgaaactgaagctctgcctaat
ggagacttaagtccaaagtcatcagtagttgcagatggcgaaaagcaagaggcattggag
gcgcaaaaagagacgagcaagaagctctctgcttctgcaccaccctataccccaacgacc
attccaatttttgggtcgattacagttccaggattcaatgaccatgtgggaatccttccc
tccccagtcaatattccaccaatgcttcctgtaaaccatgtccgcaggtcaactcctcat
cagtctgtaacagctcgagttccctatgggccgaggctctcaggtggtggcttcaaccga
tctggaaacagggttcctcgtaacaaaccaagcttccccattagccccgagtctaatggc
gaggctaagcaattcattgggccaagaataatgaaccctcatgccgcggagttcataccg
agtcaaccatgggtttctaacggatatccagtgtcaccaaacggctatcttgtatcacca
aatgggacggaaataacgcagaatgggtacccgttgtcgccggtagcaggtgcatatccg
tgtaacatacccgcacagcctcagaatggacatataatacctgcaccagtggctttagag
gaggtacatgatactgaaagcgctgaggagaagagtggaggcgaagaagagagcaacaag
gagaataaagctgcagaggatgaagaagtcactgcacaagaaactacagaaacacctgaa
aacggacagtctgcagctggtgaagagaaacccacagcacaagagatatctgacgagaat
tga
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