Brassica napus (rape): 106359063
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Entry
106359063 CDS
T04128
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106359063
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106359063
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
106359063
NCBI-ProteinID:
XP_048593807
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Position
A8:complement(16824249..16828203)
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AA seq
682 aa
AA seq
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MSPQTYYSYIKFDLEIWKKKMISQKTIASWMICFLLLLLLPIAFSEPTRNLKGTSARAPT
VQQIRNKEVIVDNGIVRVTFSNPKGLITGIKYNEIGNVLNPYLRARGYWDITWQTENNSL
PKLDRIEGTNFRIITQNEEQVEISFSRTWNGGSDHIPLNVDKRYIIRTNTSGIYTYGIFE
RQPEWPEVEMGLIRVAFKLNPDRFHYMVVADNRQRQMPTDDDRDIHSGRARPLAYKEAVK
LTNPHNHMFKNQVDDKYQYSCEVKDNKVHGWISTKSNVGFWLISPSGEYRSGGPVKQELT
SHVGPTTLTTFISQHYVGPDMETRYKTGEAWKKVLGPVFIYLNSDSTRNNLQHLLWEDAK
RQTEQEVEAWPYGFVASSDFPTRQERGTITGRLFVNDRFLAPAGYAYIGLAPPGEAGSWQ
TNTKGYQFWTQTNETGYFTIDNVRPGTYNLYGWVHGFIGDFKYQNLVNVAAGSEISLDRV
VFQPPRNGPTLWEIGVPDRTAREYFVPEPYENTMNPLYLNHTDKFRQYGLWQRYTELYPN
HDLVYTVGVSNYSQDWFYAHVTRNIGGSTYVPATWQIVFELPYVNWRGSYTLQIALASAA
RANLKVRFNNEYSRPLLSAGVGRDNAIARHGIHGAYHLYSIDVPGRLLRIGTNTIYLRQS
KAVGPFEGLMYDYIRLEEPSTA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgcaaacatattattcttacattaaattcgatcttgagatttggaaaaagaag
atgatttcgcagaagacgatagcttcgtggatgatatgtttccttctgttgcttcttctt
ccgatagctttttctgagccgacaagaaacttaaagggaacaagtgcaagagctccaaca
gtgcagcagataagaaacaaagaggtgatagtggacaatggaattgtgagagtgactttc
tcgaatcctaaaggattaataactgggatcaaatacaatgaaatcggcaatgttcttaat
ccatatctccgagctcgagggtactgggacataacatggcaaacagaaaacaacagtctc
ccaaagctggatagaatcgaaggaaccaactttagaatcataactcaaaacgaagaacaa
gtggagatttctttctcccgaacatggaatggtggttctgatcatattccattaaacgta
gacaagaggtatattatacgtacgaatacttcaggaatctacacgtatggaatttttgag
agacaacccgaatggccagaagtggagatgggtctaattcgagtcgcattcaaactcaac
cctgatagattccattacatggtggtggcagataatcggcaaagacaaatgccaacagac
gatgaccgtgacatccacagtggccgtgccaggccccttgcttacaaagaggctgtcaaa
ttgactaatcctcacaaccatatgttcaaaaaccaggtggatgataaataccagtactca
tgtgaggtcaaggacaacaaggtgcatggttggatatcgaccaagtccaatgttggtttc
tggctcatctcaccgagcggtgaataccgctctggtggaccggtcaaacaggagctcacg
tctcacgtcggtcccacgaccctcacgacctttataagccagcattatgttggtccggac
atggagacaaggtacaaaactggtgaagcgtggaaaaaggtcttgggacctgtattcatc
tacttaaactctgattccacccgcaataatctacaacatttgttatgggaagatgctaaa
cgacagaccgaacaagaagttgaagcatggccgtacggttttgtagcgtcctctgacttt
cctactcgtcaagaaagaggaaccattaccggtcgactctttgtcaacgacaggttcttg
gctccggcaggatatgcatacatcggtttagcaccgccaggagaagctggttcatggcaa
acaaatactaagggataccaattttggacacagaccaacgaaaccggctatttcaccatt
gataacgttagaccgggaacgtataatctatacggatgggttcatggttttatcggagac
ttcaaataccaaaacctagttaacgtagctgcaggttcagagataagtcttgatagagtt
gtgttccagcctcctaggaatggtccaacgttatgggagattggtgtaccggaccgaact
gccagagaatactttgtaccggaaccatacgagaatacaatgaacccgttatacttaaac
cacactgacaagtttaggcagtatgggttatggcaacgttacacggagttatatccaaac
catgatctcgtctacacagttggagttagtaactatagtcaagactggttctacgctcac
gtcacaaggaacattggtggttcgacctatgtaccagcgacatggcagattgtttttgaa
cttccatatgtgaactggcgaggtagctacacattgcaaatagctttagcttcggctgca
cgggctaacttaaaagtacggttcaacaacgaatactctcggccattgttatctgcgggt
gtcggaagagataatgctatagcaagacatggaatccatggagcctaccatctttatagc
attgatgtacctggaaggttactaagaatcgggaccaacacaatctatctacgtcagtct
aaagcggtggggccgtttgaaggtcttatgtatgattacattcgtcttgaagagccttct
acagcttag
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