Brassica napus (rape): 106359064
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Entry
106359064 CDS
T04128
Name
(RefSeq) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106359064
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106359064
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106359064
NCBI-ProteinID:
XP_013654276
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Position
A8:16805757..16811420
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AA seq
671 aa
AA seq
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MRNGAPVMKMGRVMTQVFVLIFLLQGVHSRTLRSESNNAAVTVNTSGGKQVVVDNGIIQA
TFSNPAGLVTGIKYKGFDNVLNARIQNRVYWDIVWYEPGQVSQTDYLIGEKFKIISQTSE
QVEISFSKTWDTSRRGSTVPLNVDKRYIIRRGVSGVYMYGVVERLKGWPAVTMDQTRIVY
KLNSTKFDYMAVADHRQNLMPLEADRNLTDGSAATLEYKEAVRLVKPRNKLFKGQVDDKY
LYSMEGKDNRLHGWIASEQRVGFWITTASNEFRTCGPVKQELTSHVGPTLLSMFTSTHYA
GKELNTTYASDVPWKKMFGPVFVYLNSAPSHDLMWTDAKRQLAAEVKSWPYDFVKSVDYP
LRQQRGTVKGQLSVMDSFKSKSKLNGEFAFVGLALPGEVGSWQTENKGYQFWTKADKMGM
FTIANVRPGTYNLFAWAPGHIGDYKYEREIIITPGKAINVGSLVYEPPRSGPTLWEIGVP
DRTALEFNIPDPDPALVTKLYANHPNAPEDRFRQYGLWDRYKVSYPREDVTFTVGVSDYK
KDWFFAHLNRRAGEKKLQATTWKIVFNLKQVSQTGNYTLRMALAAANTADILVRVNEPSS
KPMFRTGLVGRDNAIARHGIHGLYRLFNIGVQRNLLKAGDNTIFLTQNRVTSIFTGVMYD
YLRLEGPSGAV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacggagctccggtaatgaagatgggtcgggtcatgactcaggtttttgttctg
atattccttcttcaaggtgttcattcccgaacgttacgaagcgaatcaaataatgccgcg
gttacggttaacacatctggcggtaaacaagtggttgttgataatggtataatccaagcc
accttctcgaatccagcgggcttagttactggaatcaagtataaaggctttgacaatgtg
ttgaacgcaagaatccagaatcgagtgtattgggatatagtatggtatgaaccaggacaa
gtatcgcagacagattatttaataggagaaaagttcaaaataataagtcaaacaagtgag
caagtcgaaatttcattttctaaaacatgggatacctctcgacgcggctcgacagtccca
ttaaacgtggataaaagatatattattcgacgcggtgtatctggagtgtatatgtacggt
gtggtagagaggttaaaaggttggccggcagtaacaatggaccaaaccagaatcgtctac
aagcttaacagcacaaagttcgattatatggctgtagcagatcatcgacagaatctaatg
cctttagaagcagatcgaaatctcaccgatggtagtgccgctacattggaatacaaagaa
gcggttcggttggtaaaaccacgaaataaattatttaaagggcaggttgacgataagtat
ctttactcaatggaaggcaaggacaacagactacatggttggatagcttctgaacaacgt
gtcggcttctggattactactgccagcaacgagttccgtacttgtgggcccgtcaaacaa
gaactcacttctcatgttggacccaccttactttctatgtttacaagtacacactatgcc
ggaaaagaactcaacacaacttacgcaagtgatgtgccgtggaagaagatgtttggtcct
gtctttgtttatcttaactctgccccctctcatgatctcatgtggaccgatgctaaacga
cagttggctgccgaggttaaaagctggccttatgacttcgtgaagtcagtagattaccct
cttcgccaacaaagaggaacagttaagggtcaactatctgtcatggacagcttcaaaagc
aagtcgaagttaaacggagagtttgcttttgtgggtttagcattacctggcgaagttggt
tcatggcaaaccgaaaacaagggatatcaattttggacaaaagcagacaaaatggggatg
ttcacaatagcgaatgtgagacctgggacatataacctcttcgcatgggctcccggacat
attggtgactataaatacgagcgtgaaattataattacaccaggtaaggcaataaacgta
ggatccttagtgtatgagccgccaagaagtggtccgacgctgtgggagatcggtgtaccg
gatcggaccgccttagaattcaatatcccagatccggacccagcccttgtgaccaaacta
tatgctaatcacccaaatgctcctgaagacagatttagacaatatggtctatgggatcgt
tacaaagtatcgtatcctcgagaagatgttacttttactgttggagtgagtgactataaa
aaagattggttctttgcacatctcaacaggagagctggagaaaagaaacttcaagcaacg
acatggaaaattgtttttaacttaaaacaagtgtcccaaactggaaattatactcttcga
atggctttggctgcagccaacactgccgatatattagttcgggtcaacgaacctagctcc
aaacctatgtttaggactgggttagtaggtcgggataacgcgattgctagacatggaatt
catgggttatacagattgttcaatataggcgttcagagaaacttgcttaaggctggtgac
aatacgatttttctcactcaaaaccgggtcactagtatttttacaggtgtcatgtatgat
tatcttcgattggaaggtccttcaggagccgtataa
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