Brassica napus (rape): 106359234
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Entry
106359234 CDS
T04128
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106359234
09122 Translation
03013 Nucleocytoplasmic transport
106359234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106359234
03041 Spliceosome [BR:
bna03041
]
106359234
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
106359234
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106359234
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106359234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
106359234
NCBI-ProteinID:
XP_048593930
LinkDB
All DBs
Position
A8:18573390..18586621
Genome browser
AA seq
1802 aa
AA seq
DB search
MSLPLLECKYVTEEFVREGKSGSYGSKLPSSVPMLRFLYELCWVLVRGELPIQSCKAVLE
KVKFLDDPSKEELASCFADVVTQIAQDLTMSGDHRSRLTKLAKWLVESQTVPQRIFQERC
EEEFLWEAEMVKIKAQDLKGKEVRLNTRLLYQQTKFNLLREESEGYAKLITLLCRGSAGS
SHNASAATMGIIKSLIGHFDLDPNRVFDIVLDCFELEQDYDTFLNLIPIFPKSHASQILG
FKFQYYQRLEVNSPVPSGLYKLTALLVKKNFISLESIYAHLLPKDEEVFEDYNTYSAKRF
EEANNIGKINLAATGKDLMEDEKQGDFKVDLYAALDMETEAVAERIPELENNQTLGLLDG
FLSVDDWKHANIMFERLAPLNPVAHNHICDGLFRLIEKRITHAYRIARQTRFQNSSSASS
EKIAHAANTSASKTCPDLKEVFQILVTVGPYLYRNTQLLQKICRLLRVYYLSSLDLVRSS
DGSSNQEGSADEIKHLKEARFRVEEALGTCLLPSLQLIPANPAVGHEIWEVMSLLPYEAR
YRLYGEWEKDDERNPLLLAARQVAKLDTRWILKRLAKENLKPLGRMVAKLAHANPMTVLR
TIVTQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLVQGGRAKLKDDGINLSDWLQS
LASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTENLTEDQL
DAMAGSETLRYHATSFGMTRNNKALVKSSNRLRDSLLPNDEPKLAIPLLLLIAQHRSLVV
VNADAPYIKMVTEQFDRCHGILLQYVDFLSSAVTPATAYAQLVPSLEELVHTYHLEPEVA
FLVFRPVMRLFKCRRNGDVSWPLDSGESIDADSDVSKSESSMILDVGTSEKAVTWSDVLD
TVRTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEISKQHTALKTLEEVADNSSS
AITKRKKEKERIQESLDRLTGELKKHEEHVASVRRRLSREKDKWLSSCPDTLKINMEFLQ
RCIFPRCTFSMADSVYCAMFVHMLHSLGTPYFNTVNHIDVLICKTLQPMICCCTEYEVGR
LGRFLFETLKIAYHWKSAESIYESECGNMPGFAVYYRYPNSQRVTFGQFVKVHWKWCAKI
TKLLIQCLESNEYMEIRNALIMLTKISGVFPVTRKTGYNIEKRVAKIKNDEREDLKVLAT
GVAAALSARKSSWVTDEEFGMGYLELKAPPVHTPKHTPSQNGLVGGESTGGRSTANQQPE
FGGKDQLSKTKIPDGRTENMPSKSDQGHPKSKGGNPSDAQPSMSKKPVDQKETDESPRIS
DENPVKAGSKYSEAELKPSSKRGASATSTNKSTKQDFGKDDGKSGKAAGRTSAADNDVIY
LGSRQASLTKASPSTAGNGSLATGSSKVKDDGAEATDTQKQSTRTAHSPRHEISTSSRSS
DRLQKRANAVEDSDRTSKRRKADSEHKEHDSEARPSDRDRSAEARVDLNKTPSDDQSTQR
DQDRAKDKGNERQDRDHRERVERSDKTRADDAVKARDKSMERYGRERSVERGLDKGITRS
YDRNKDERSKDDRSKLRHSEASLEKAHGDDRSLSQGLPPPPPLPPNIVPHSMASKEEPER
RAGVTRHSQRLSPRHDERERRRSEENTSVSVEESKRRRDDDFRDRKRDDRETIILKGEER
EREREREREKSIPLKDDFEASKRRKIKRDQQVSSAEPGEYSPMPHQSSLSMGMGPSSYEG
REQRKSSSSMIQHGGYPEEPSIRLLGKEASSKMARRDPDPMYDREWEEDKRQRAERKRRD
RK
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccgctacttgagtgtaagtacgtgacggaggagttcgttcgcgaagggaag
agtggcagctacggttccaagttgcccagctcggtaccgatgcttcgtttcctatacgag
ctttgttgggttttggttcgtggcgagttgccgattcagagctgtaaggctgtgttggag
aaggtgaagtttttggatgatccgtcgaaggaagagttagcttcttgttttgcggatgtt
gtgactcagatagctcaagatcttactatgtcgggggatcaccgttctcgcctaacaaaa
ttggcaaaatggcttgtggaatcacagacagttcctcaaaggattttccaagagcgttgt
gaggaggagtttttatgggaagctgaaatggttaaaattaaagcccaagatttgaagggg
aaagaggtgcgattaaacactcgtcttctgtaccagcagacaaagttcaacttactccgt
gaagaaagcgagggatatgccaaattgattacccttttatgccgaggatctgcaggttct
tcgcataatgcatcagcagcaaccatgggaattatcaagtcattaattgggcattttgac
cttgatccgaaccgtgttttcgacattgtgttggattgctttgaacttgaacaagattac
gacacgtttctcaatctaattcctatctttcccaagtctcatgcttcacaaattcttgga
tttaaatttcaatactatcagagattggaggtgaatagcccagttccatctgggctctat
aagcttacggccttgctagtaaagaagaatttcatcagtcttgaaagcatatatgcacat
ctgctacctaaggacgaagaagtttttgaggattataatacttattctgcaaagcgtttt
gaagaggccaataatattggaaagataaatcttgctgctactgggaaggatcttatggag
gatgagaagcaaggagatttcaaagttgatctctatgctgctttagacatggaaactgaa
gctgttgctgagcgaataccagagcttgaaaataatcagactctgggcctccttgatggt
ttcctctctgtggacgactggaaacatgccaatatcatgttcgagcgtcttgcgcctctt
aatccggtggctcacaatcatatatgtgatggcttgtttaggcttatagagaagagaatc
actcatgcttatcgcattgcccgtcagacacgttttcaaaattcttcttctgcgagttca
gaaaagattgcccacgctgctaatacaagtgccagtaaaacttgtccagatcttaaagaa
gtgtttcagatacttgttacagttggaccctacttgtaccgtaatacacaactgctgcag
aagatttgtagactattaagggtttactacttgtcgtccttagatcttgttcgcagtagt
gatgggtcatcaaatcaagaaggtagtgcagatgaaatcaagcacctgaaggaagctagg
tttagagtggaagaagcccttggaacatgccttctgccatcgttacagttaatacctgca
aatccagcagttggtcatgagatttgggaagtgatgagtctccttccatatgaggctcgt
tatcgcttatatggtgagtgggaaaaggacgatgagcggaatcctttgctgttggcagca
aggcaagtggctaagttggacactagatggattctgaaacggcttgcaaaagaaaatttg
aagccgttaggaaggatggtggcaaaacttgcgcatgccaatcccatgacggtgcttcgg
acaattgtgactcagattgaagcatacagagatatgattgctcctgttgtagacgccttc
aagtacttgacacagctcgagtatgatatcctggaatatgtcgtgattgagagactggtg
caaggcggacgagctaaactcaaagatgacgggattaatttatcagactggcttcaatct
ttggcttcattttggggtcacctgtgtaagaagtatccatcaatggagttaaggggtctt
ttccagtatctcgttaaccagttaaagagaggccaagggattgagcttgttcttctccag
gaactgatccagcagatggcaaatgtacaatacactgagaatcttactgaagatcagttg
gatgccatggcaggaagtgagacattacgttatcacgcaacatcctttggcatgacacgg
aacaacaaggcacttgtcaaatcatccaaccgtctacgagattcgttacttccaaatgat
gaaccaaagctagctatcccccttttgttacttatcgcccagcatcgttctctggttgtg
gtaaatgcggatgcaccctacattaagatggtcactgaacagttcgacagatgtcatgga
attctcctccaatacgtggactttctttctagcgctgttactcctgctactgcttatgct
cagctcgtaccttcgcttgaagagcttgttcatacataccatcttgagccagaggtcgct
tttttggtatttcgacctgtgatgaggctcttcaaatgtcgacggaatggtgatgtttca
tggcctttggacagtggggaatctattgatgcagattccgatgtatcaaaatctgagagt
tccatgattcttgatgtcggcacatctgaaaaagctgtaacgtggtctgatgttcttgat
acagtaagaacaatgctgccttcgaaagcttggaatagtctgtcgccagacctctacgct
acattttgggggcttactctgtatgatctccatgttcccagaagtcgttatgagtctgag
atatctaaacaacatactgcccttaagactcttgaagaggttgctgataattctagctca
gcaattacgaagagaaaaaaagagaaggaaaggattcaagaatctcttgatcgtctaacc
ggtgaactgaaaaagcacgaagaacatgttgcctctgtccgtagaaggctttcacgtgaa
aaggataaatggttgagctcctgtcctgatactttgaagatcaatatggagttcctgcaa
cgttgtattttccctcgttgcacatttagcatggcagattctgtgtactgtgctatgttt
gtacatatgctccactctcttggaacaccctattttaacacagtcaaccacattgatgta
ctgatatgtaaaacgctacaaccgatgatctgctgctgcactgaatacgaggttggaaga
cttgggaggtttttattcgagaccttgaagattgcataccactggaagagcgcagaatca
atctatgaaagtgagtgcggaaacatgcctgggtttgctgtttattatagatacccgaac
agccagcgtgtcacatttggacaatttgtgaaggtacattggaaatggtgtgcaaaaatc
acaaagcttttgatccaatgtctggagtcaaatgagtacatggagattcgtaatgcgcta
ataatgctaacaaaaatatctggtgttttcccagttactcggaaaactggatataatatc
gagaaacgggtagcgaaaattaaaaatgatgagcgagaggaccttaaggtcttggcaact
ggtgttgccgctgctctatctgcaagaaaatcatcatgggttactgacgaagaatttggc
atgggttaccttgaactaaaggctccgccagtacatactcctaaacatactccttcccag
aatggcttggtaggtggtgaatcaactgggggaagatctactgctaaccagcagcctgag
tttggcggcaaggatcagttgtcaaaaactaaaataccagatggaagaacggaaaatatg
ccttcaaaatctgatcaaggacatccaaaatcaaagggaggcaatccatcggatgcccaa
ccatctatgtctaagaaaccagtggaccaaaaggaaacagatgaatcacccaggatatct
gatgagaatcctgtcaaagctggttcaaagtactctgaagccgagttaaaaccttcttct
aaacgaggtgcatcggctacgtcgacgaacaaatcaacaaagcaagattttggaaaagat
gatggaaagtccggtaaagctgctggaagaacatccgcagctgataacgatgttatttat
ctggggagcaggcaagcaagtttgaccaaagcttctcccagcacagcaggcaatggtagc
ttagctactggttcgtccaaagtgaaagatgatggtgctgaagctacagatactcaaaag
caatctactcggactgctcattcccctaggcatgaaattagcacttcttcgaggtcgagt
gataggttacagaaacgagctaatgctgttgaagatagtgacagaacaagtaaacgccgt
aaagcagactctgagcacaaagagcatgacagtgaggctcgcccgagtgatagagacaga
tcagcagaggctagggtggatttaaacaaaacacccagtgatgaccaaagcacccagaga
gatcaagacagggcaaaggataagggtaatgaaagacaggaccgagaccacagagaaaga
gtcgagcgttctgataaaactcgtgcagatgatgcggtaaaagcacgagacaaatccatg
gaacgttatggcagagagcggtcagttgagaggggccttgataaaggaataactaggagt
tacgatagaaacaaggatgaaagaagcaaagatgacagaagcaaattgcgtcatagcgag
gcgtcacttgagaaagctcatggtgatgatcgttctctttctcaaggcttacccccacct
ccacctctacctcctaacatcgttcctcattctatggcctcgaaagaagaacccgaaagg
agggccggagttacaaggcattcccagaggctttctccgaggcatgatgaaagagagaga
cgacgctctgaagagaatacatcagtttctgttgaagaatcaaaacgaagaagagatgac
gattttcgtgaccgtaagcgagatgacagagaaacaatcattctgaagggagaagaaagg
gaaagagagagggaaagagaaagagaaaaaagtatcccattgaaagatgattttgaagcg
tccaagagaaggaagataaagagggatcaacaagtctcatctgcagagccaggggaatac
tctccaatgccacatcagtcatctttgtcaatgggtatgggaccatcatcgtacgaaggc
agagagcagcgaaagagcagtagtagtatgattcaacatggaggttatcctgaagagcca
agcatcagacttcttggcaaagaagcttccagcaagatggctcgtcgtgatcctgaccca
atgtatgatcgtgagtgggaagaagacaagaggcaaagggcagaacggaagcggagagat
cggaagtag
DBGET
integrated database retrieval system
