Brassica napus (rape): 106359728
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Entry
106359728 CDS
T04128
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106359728
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106359728
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106359728
NCBI-ProteinID:
XP_013654826
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Position
A8:complement(12600541..12602101)
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AA seq
277 aa
AA seq
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MVGNCPPNPQRTSASGYKTIDGRGAKVEIAYGPCITIQQVTNVIVHGISIHDCKPAKYGM
VRSSTTHVGHRKGSDGDAIAISGSSHIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQ
HVKVMLLGHNDNFVQDVNMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIG
GSADPTIFSEGNYFIASDKSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSV
DLPYSSAQRFTVAPGNMVPSLTADAGPLNCNRNLPCY
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggtaggcaattgcccccccaacccacaacgtacctccgcctctggctacaagaccata
gatgggagaggggcaaaagtggaaattgcgtacggaccgtgcattacgatacaacaagtg
acgaacgtaattgtgcatgggatcagcatccacgactgcaaaccggcgaagtatggaatg
gtgaggagtagcacaacgcatgtcggtcatcgaaaaggatcggacggtgatgcgatcgct
atttccggttcgtctcatatttggatcgaccattgttatctagcgagttgtacggatggc
ctgatcgatgtgattcatgcttccacgggaatcaccatttccaacaactattttactcag
catgttaaagtgatgttgctcggacacaacgataacttcgtgcaagatgtgaacatgaaa
gtgactgtggcattcaatcattttggaccaggacttgtggagagaatgccaagggtaaga
cgaggttacgctcatgtggcaaacaatagatacgataaatggataatgtatgcaattggt
ggtagcgccgatccaaccattttcagtgaaggaaactatttcattgcttctgataaatct
aacagtaaagaggtgacaaagagagaagtgaaaggagggtggaacaattggagatggaga
acttcaaaggacgttttcaagaacggagcttacttcgtaccttccggttacggcagcgtt
gatttgccatacagttccgctcagcgattcacagtggctccagggaacatggttccttct
ctaaccgcagacgctggccctctaaactgcaaccgcaatctcccttgttattag
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