Brassica napus (rape): 106360022
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Entry
106360022 CDS
T04128
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
bna
Brassica napus (rape)
Pathway
bna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106360022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106360022
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106360022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ApoL
Mating_N
DUF2465
DUF6437
Motif
Other DBs
NCBI-GeneID:
106360022
NCBI-ProteinID:
XP_013655115
UniProt:
A0A078ITW7
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Position
C3:complement(29298802..29303084)
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AA seq
937 aa
AA seq
DB search
MEGNFEETNKLPELKLDAKQAQGFLSFFKTLPNDSRAVRFFDRKDYYTAHGENSVFIAQT
YYHTTTALRQIGSGANALSSVSISKNMFETIVRDLLLERNDHTVELYEGSGSNWRLVKAG
SPGNIGSFEDVLFANNEMQDTPVVVSLFLSFQESRCVVGMAYVDLTRRVLGLAEFLDDSR
FTNLESSLVAIGAKECIFPAESGKSNECKSLYESLERCGVMTTERSRQEFKGRDLESDLK
RLVKGNIEPVRDLISGFELATPALGALLSFSELLSDEGNYGNFTIRRYDISGFMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEITMRLDIVQCF
VEEAGLRQDLRQHLKRISDVERLVRSLERRRGGLQHIIKLYQSTIRLPFIKTSLQQYTGE
FSSLISKRYIKRLEALSDADHLGKFIDLVEYSVDLDQLENGEYMISSSYDATLSSLKDQK
ELLEQQIHELHKKTAIELDLPVDKALKLDKAAQYGHVFRITKKEEPKIRKKLTTQFLVLE
TRKDGVKFTNTKLKKLGDQYQSVVDDYKSCQKELVDRVVQTVASFSEVFEELAGMLSEMD
VLLSFADLAASCPTPYCRPEVTSSDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGESW
FQIITGPNMGGKSTFIRQVGVTVLMAQVGSFVPCDKASVSIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKKAPTLFATH
FHELTALAQANSEVAGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFA
NFPESVVALAREKAAELEDFSPPSIVINNEESGKRKSREDDAEEVSRGAARAHKFLKEFA
EMPLDKMELKDSLKRLHELKEELEKDDVGCHWLKQFL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtaacttcgaggagacgaacaagcttccggagcttaaattagatgctaagcaa
gctcaagggtttctctctttcttcaaaaccctaccaaatgactcgagagctgttaggttc
tttgatcgcaaggattattacacagctcatggggagaactcagttttcattgctcagact
tattaccatacaaccactgctctacgccagattgggagtggagcaaacgctctttcgagc
gtcagcattagtaagaacatgtttgaaaccatcgtcagggatcttctcctggagaggaac
gaccataccgtggagctttacgaaggaagcgggtcgaattggaggcttgtgaaagcaggc
tctcctggaaacattggtagcttcgaagatgttttgtttgcaaacaacgagatgcaggac
acgccggttgttgtctccttgtttctgagttttcaggagagcagatgcgttgtcgggatg
gcttacgttgatctcacaaggagggttcttggactagctgagtttcttgatgatagccgc
ttcactaacctggagtcttccctcgttgctataggcgcgaaagaatgcatctttccagct
gagtctggcaaatctaatgaatgcaaaagtttgtatgagtctcttgagaggtgtggtgtg
atgacaacagagagaagtcgtcaggagtttaaaggaagagatttagagtcagatctaaag
aggttggtgaaggggaacattgagcctgttagagatttaatctctgggtttgagcttgcc
acccctgctcttggcgcattactctccttctctgaacttctctcggacgagggtaactat
gggaacttcacaatacgcagatacgacatcagcggattcatgagactcgactctgcagct
atgagggcgctgaatgtgatggagagcaaaactgacgcaaacaagaatttcagtttgttt
ggtcttatgaacagaacatgcaccgcagggatggggaagagactgcttcacatgtggctc
aagcagcctctcgtggatttgaatgagattacgatgaggttagatatagttcagtgcttt
gttgaagaagctgggttaaggcaagatcttagacagcatctgaagcgcatctcagatgtt
gagaggcttgtgaggagtctcgagagaagaagaggcggtttacagcacattatcaaactc
tatcagtcaactataaggcttcccttcatcaaaacatcactacaacagtacaccggagag
ttctcatcgctcatcagcaaaagatacatcaaaaggcttgaggccttatcagacgcagat
cacctcggcaagttcattgatctggtagagtactctgtagaccttgaccagctagagaac
ggagagtacatgatctcctcaagctacgacgccacgttatcatctctcaaagatcagaaa
gagttgctggagcagcagatacacgaactgcacaaaaagacagctatagaactcgatctt
ccggtggacaaggccttgaaactcgacaaagcagcgcagtatgggcatgtgttcaggatc
acgaagaaggaagagcctaagatcaggaagaagctgacgacgcagttcttggtgctggag
actcgcaaagacggagtgaagttcacaaacacaaagcttaagaaacttggggaccagtac
caaagtgttgtggacgattataagagctgtcaaaaggagctcgttgatcgtgttgttcag
actgttgccagcttctccgaggtgtttgaggagctagcagggatgctttctgagatggat
gttttgctaagctttgctgatttggctgcaagttgccctacaccatactgtagaccagaa
gtcacctcttcggatgttggagacattgtgctagaaggaagcagacatccatgcgtagaa
gctcaagattgggtgaactttataccaaatgattgtagacttatgagaggggagagttgg
tttcaaataataacgggacctaacatgggaggaaagtccactttcattcgccaagttggt
gtgactgttctgatggctcaagttggttcctttgttccttgtgataaagcttcagtttcc
atcagagactgtatctttgcccgtgtaggagcaggcgattgtcaactgcgtggagtgtct
actttcatgcaagaaatgcttgaaactgcttcgatattaaaaggagctactgataaatca
ctgataataatcgatgaattgggccgtggaacatcaacctatgatggttttggtctagca
tgggctatatgtgagcatctggttcaagtgaagaaagcccctactctgtttgctactcac
ttccatgaacttactgccttggctcaagcgaactctgaagttgcaggtaacaccgttggt
gttgcaaacttccatgttagcgcgcacattgacacagaaagccgcaaactcaccatgctt
tacaaggttgaaccaggggcatgtgaccagagctttgggatccatgtggctgagtttgcc
aacttccctgaaagcgtagttgcgctagcaagggagaaagctgccgaactagaagatttc
tctccaccttccatagttatcaacaatgaggaaagtgggaagagaaagagcagagaagat
gatgcagaggaagtatcaagaggggcagcacgagctcacaagtttctgaaagaattcgca
gagatgccacttgataaaatggagctaaaagattcacttaaacgcctacatgagctgaaa
gaagagctagagaaagatgacgtcggctgccactggctcaagcagttcctctga
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