Brassica napus (rape): 106360268
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Entry
106360268 CDS
T04128
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106360268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106360268
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106360268
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106360268
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
106360268
NCBI-ProteinID:
XP_022546534
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Position
A8:22317186..22320322
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AA seq
530 aa
AA seq
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MYGFSCTQLLLFIVKCFLIHLLTFFSSFVSAQSTICKMSTSSNSTSSLTGSTSSVPDGSR
RTFTPFFPQFGSMSPVLNPDGTLQGVYDVKDHIFFPTSNVPRAGPRNSVFGAPILVNATS
SRAPPPPSSMGNTAGGVSMSRALISDGGNIMSSTGSMAGGGLMSRALIFDGGSIMSSMGS
MDGSTDHNRSMMIGLQGSPQVYSMSGSSYPSAARGHSQTHVQAMNSLSSMNLMNSNYMTT
DYQMDLHQQELMMQSQQSSMGRHGGFYFGDASMPTYPLQLPSDQAVSRSGVIFSQTGGPP
TIGSRSVNAATGYDDQPLRHHQNTSQFGGEKLPAIGQPIRDVGSQPTQAATQSTPDPFSM
LGLVNVINQTNPDVTTLALGVDLQEIGLDMTSKEKLFKTFASPWANEPLKEDHEHFDLPQ
CYNAVQLPPPNQGMFRRFDMSTLFYIFYSMPNDEAQLYAANELNNRYWFYHKEHKCWFKR
TEIPLVQTNAYERGTYDCFDPDKFETVQKENFVIYYEMLERRPSLPQHRV
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgtatggcttcagctgcactcaacttctactgtttatagttaagtgtttcttgatccac
ctgcttacgttcttttcttccttcgtttcagctcaatcaaccatttgcaaaatgtcaact
tcttctaactcgacgtcatcactcaccggttctacttcgagtgtaccagacggttcaagg
agaacgttcactcctttctttcctcagtttgggtcgatgtctcctgttttaaaccctgat
ggaactctccagggcgtttatgatgttaaagaccacattttttttcccacctcgaatgtt
ccccgcgctggaccgagaaactcagtttttggagctccaattttggtaaatgccacaagc
tctcgagcaccaccaccaccgagctctatggggaatacggctggtggagtctcaatgagc
agggctttgatctctgatggaggaaatataatgagctctacggggagtatggctggtgga
ggcttaatgagcagggctttgatctttgatggaggaagtataatgagctctatggggagt
atggatggaagtactgaccataatagatcaatgatgattgggctccaaggatccccacag
gtttattctatgtctggaagctcctacccttctgctgctagaggacattcccaaactcat
gttcaagcaatgaacagcctaagctctatgaacttaatgaactccaactacatgacaact
gattatcaaatggatttgcatcagcaagaactaatgatgcaatctcaacagtcatctatg
gggaggcatggtggattttattttggtgatgcgtctatgccaacatatcctctacaacta
ccaagtgatcaagctgtgagccgtagtggtgttatcttctctcagactggtggacctccg
actattggatcaagatctgtgaatgctgcaacgggttatgacgaccagcccctccggcac
catcagaacacatcccagtttggcggggagaagctaccagctattggccaacccatcaga
gacgtgggatcacaaccaacgcaagcggcgacacagtccactcctgacccttttagcatg
ctaggtttggttaatgtgattaaccagaccaaccctgacgtgactactttggcacttggg
gttgacttgcaggaaattgggttagatatgacctcaaaagaaaaacttttcaagactttc
gcctcgccttgggctaatgaaccccttaaagaggatcatgaacacttcgatctaccgcag
tgttacaacgcagtacaactaccacctccaaatcaagggatgtttagaaggtttgacatg
agcacattgttttacatattttatagcatgccgaatgatgaggcgcagctatacgcagct
aatgaacttaacaacaggtactggttctaccacaaagaacacaagtgttggttcaaacga
actgagatacctctcgtgcaaacaaatgcttatgaaagaggaacatatgactgttttgat
ccagacaaatttgagaccgttcaaaaggaaaattttgttatttattatgagatgctggaa
aggaggccgtctctacctcaacaccgagtgtaa
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