Brassica napus (rape): 106360714
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Entry
106360714 CDS
T04128
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106360714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106360714
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
106360714
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
106360714
NCBI-ProteinID:
XP_013655818
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All DBs
Position
A8:10954480..10959454
Genome browser
AA seq
1265 aa
AA seq
DB search
MKRKRYYQLNHTFDPCPFEVFCSGTWKAVEYLRVESGSMTMRLFENGHVLDDVKPFQKLR
LRSRKATTIDCTTFLRHGVDVCVLYQKDEVTPEDDLEPVWVDAKIVSIERKPHEPECLCE
FHVSIYIDQGCISSEKHRMNRASVLMGLDQISILQKFPKEQSLDRFYRWRCSEDSASLVK
TRLTLGKFMPDLSWLLVTSVLKNTVFHIKTIQNKMVYLIMTDEESSSSSCLSAMNITVED
GVYLSKVVTFNPDEDDTTLALDYVHVEEEESEEEEEVMELRRSKRRNMRPDRYGFSGVQP
DSKDGWVRLMPYKYSTWTDDEEGDDEDSNDDGDSDDDLYLPLSHFFGKESNTKGFSKRKE
SEIVLVDKTARKKKMKMKKRDGSGGSRELSVIPFTPVFDPIPLEQFGFNANSLCSGGFSG
SNLIDEMDRYRSKPSKYGKKKMLSEMDEMESDLGWIDNMSKSSVQKRAGSHSRIRSGYGK
TGHSDEPQIFKRRTLSAGAYNKLIESYMSNIDSTIAAKKETNSVVEQWEALKNPTSTTVE
DEDGSSEDDDSEGETSENEMLWREMELCMASSYILDDNELRVDNEAFQKATSGCEHDYEL
NEEIGMCCKLCGHVGSEIRDVSAPFARQKKWTTEAKHINEEDIDTNVKQDGDERRSFTMP
VATLEVPSPEESENVWSLIPQLRRKLHMHQKKAFEFLWRNLAGSVVPSMMDPSSDKIGGC
VVSHTPGAGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHG
RRTYCVAKENKIQFKGIPKPSQDVSHVIDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSK
FAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRVLLSGTLFQNNFCEY
FNTLCLARPKFIHEVLMELDEKFNTNQTVQKAPHLIENRARKFFLDIIAKKIDTKVGDER
LQGLNMLRNMTSGFIDNYEGSGSGDVLPGLQIYTLLMNSTDLQHKTLTKLQTVMSTYHGY
PLELELLITLAAIHPWLVKTSTCCAKFFNPEELFEIEKLKHDAKKGSKVMFVLNLVFRVV
KREKILIFCHNIAPIRLFLELFENVFRWKRGREILTLTGDLELFDRGRVIDKFEEHGGPS
RVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGT
LEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNE
KASTG
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaagcgttactatcagttgaaccatacgtttgatccatgtcctttcgaggtg
ttctgttcagggacatggaaggcagtggagtacttaagagtcgagagtggatcgatgacc
atgcgactttttgagaacgggcatgtactggatgatgtaaaacctttccaaaagcttcgt
cttagatcaagaaaggccactactatcgactgcaccacttttctacggcacggtgttgat
gtttgtgttctctatcagaaagatgaagtgactccagaggatgacttggagccggtatgg
gttgatgcaaagattgtatccatagagaggaagcctcatgaacctgagtgcttgtgtgag
ttccacgtcagcatctatatagaccaaggctgcatcagttcggagaagcataggatgaac
agagcttctgtgctcatgggactggaccaaatctccattctccaaaagtttccaaaggaa
caaagcttggaccggttctacagatggagatgctccgaggacagtgcatcactagtgaaa
acaaggcttacactcggcaaattcatgcctgatctttcttggcttcttgttacatcagtc
ttgaaaaacactgtgttccatatcaaaactatccaaaacaagatggtgtatctgattatg
acggatgaagagtctagtagtagttcttgtttgagtgcaatgaatatcacggtggaagat
ggagtttacttgtcaaaggtggttacattcaatccagatgaggatgatactactcttgct
ctggattatgttcatgtagaggaggaggaaagtgaagaggaggaggaggtgatggagctg
cgacgatccaagagaagaaacatgaggcctgatagatatggtttctctggggttcagcca
gattcaaaggatggatgggtaaggcttatgccatataagtacagcacatggactgacgac
gaagaaggtgatgatgaagatagtaatgatgatggagattcagatgatgatttgtactta
cccttatcacacttctttgggaaagagagcaacacaaagggattcagtaaacgtaaggaa
agtgagattgttttggtagacaaaacagcgaggaagaagaagatgaagatgaagaaaaga
gatggaagtggtggaagccgcgagctctcagttatccccttcactcctgtgtttgaccct
ataccattggaacagtttggtttcaatgcaaacagtttatgtagtggtggattctctgga
agcaatttgatagatgagatggatcggtatcgtagtaagccttctaaatacggtaagaag
aagatgttgtcggaaatggatgagatggaatctgacttgggttggattgacaacatgagc
aagtcctcggtccaaaaaagagcaggatcacactcccggataaggtccggttatgggaaa
accggacattctgatgaaccgcagatatttaagaggagaacattgagcgcaggtgcttat
aacaagctgatagaatcatacatgagtaatattgactccacaattgcagccaagaaggaa
acaaacagtgttgttgagcaatgggaagcgttaaagaaccccacaagcactacagtggaa
gatgaagacgggtcgagtgaggatgatgatagtgagggagagacgtcagagaatgagatg
ttgtggagggagatggaactatgtatggcttcttcttacattcttgatgacaatgagttg
agagtggataatgaggcgttccagaaagcgacaagtggttgtgaacatgattatgaactg
aatgaagaaattggaatgtgttgcaaattatgtggtcatgtaggatcggagataagagat
gtttctgcaccttttgcgcgacaaaagaaatggaccacagaggctaagcatatcaacgaa
gaagacattgacactaatgtgaaacaagacggagatgagagacgcagtttcactatgcct
gtggctaccttagaggttccttcacctgaagaaagcgagaacgtttggtcactaatacca
cagcttaggagaaaacttcacatgcaccagaagaaagcttttgagtttctctggagaaac
ctagctgggtcggtagttccatccatgatggatccgagttcagataagataggtggctgc
gtggtttctcataccccaggagctggcaaaacatttctcatcatagcttttctcgcaagc
tacttgaagatattccctgggaagaggcctttggttcttgctcccaaaacaactttgtac
acatggtacaaggagttcatcaaatgggagattccagttcccgttcacttgatccatggc
cgtagaacctactgtgtagccaaagagaacaagattcagttcaaggggattccaaaaccg
agccaagatgttagtcatgttatcgactgtttggacaagattcagaagtggcatgctcag
cctagtgttcttgtaatgggttacacttcgtttctaacattaatgagagaagattccaag
tttgctcacaggaagtacatggctaaggtactgagagaatctccggggcttctggttcta
gacgagggacacaatccgaggagtaccaagtcgagattgcgcaaggctttgatgaaagtt
gacactgacttgagggttctgctgtctggtacattgtttcagaacaacttctgtgagtac
ttcaacactttgtgcttggctagacccaagtttattcatgaggttctaatggagttggac
gagaagttcaataccaaccaaactgttcaaaaggcgcctcacttgattgaaaacagagcc
aggaagttcttccttgacattatagccaagaagattgacacaaaagttggagacgagcgg
ttgcaaggtcttaacatgttgaggaacatgaccagcggtttcattgataactatgaagga
agtggaagcggtgatgttcttcctggtttgcagatctacacgttgttgatgaactccaca
gatttacagcacaagactcttacaaaacttcagacggtgatgtcgacttaccatggttat
cccctggaactggagcttctcataaccttagcagctatccatccttggctggttaaaacc
tccacgtgttgcgccaagttcttcaaccctgaggagcttttcgagatcgagaagctcaag
catgacgccaagaaaggatccaaagtcatgtttgtgctcaatctcgtgtttagggtggtc
aagagggagaaaattctcatcttctgccacaacattgcgccgatccgcctgtttcttgag
ctgtttgagaatgtgttcaggtggaagagagggagagagatccttaccttaacaggggat
cttgagctgtttgacagaggcagagtgatagacaaattcgaagagcatggaggtccttct
cgtgttctgctggcttccatcacagcctgtgcagaagggatcagtctaactgctgcttcg
agggtgatcatgcttgactcggagtggaatccttccaagacaaagcaagcaatagcacgc
gcgttcagaccaggacagcagaaagtggtgtacgtttaccagctcttgtccagaggaaca
cttgaggaagacaaatacaggaggacgacgtggaaagagtgggtctcaagtatgattttc
agcgaagaatttgtagaggacccgtcacagtggcaagctgaaaagattgaagacgatgtt
ctcagagagatcgtagaggaagacaaagtcaaatccttccatatgatcatgaagaacgag
aaagcttcaactggttga
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