Brassica napus (rape): 106361511
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Entry
106361511 CDS
T04128
Name
(RefSeq) endoribonuclease Dicer homolog 3 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106361511
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106361511
microRNA pathway
RISC loading complex
106361511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
DEAD
Helicase_C
ResIII
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
106361511
NCBI-ProteinID:
XP_013656716
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All DBs
Position
A6:15638285..15645010
Genome browser
AA seq
1523 aa
AA seq
DB search
MEGDEPRGGGSDSLSVKRKFYEIDEDSSPMNGSSELYEVAQTRNTIALLETGVDKFGVIN
LLIKPIPSSDSPKRFIICLAPTVNLVKQHCCEIRAHLNLKVEDYYGAKGVDKWTSHRWEE
ELFKNEVLVMTPQIFLDALRGGFLKVEMVRLLVIDECHRTTGNHPYAMIMKEFYHKATDK
PRMFGLTTTAAIRKDQVSELENLMDSQIFNPQGQKGVDKFVTKVKEGPVFYDPAPLCRLE
LKDKLRTSHLKFDASLLSLLQELEKGNCQDVEENKFKAYQKRLSADYHDILHCLDSLGLI
CAHLAAEICLEKISETETYNECSMVCKEFLSDVLSTLGLFLQKEEKNSVDLPQDNPSAVI
SGLVSPKLQELFHLLDSLRGEMQKPCLIIVERIITAEVIERYVKKQASLGYLYVLSLIGN
NASTQALAQKMQDSFHVGKVNLVFITDVVEEGFHMPDCSCMVCFDLPKTVCSYSQSQELA
KQSNSKSIMFLERGNPSQRDHLYDLMRRQVPKETPNQANCQDLKENGATVHDEPAPKEQS
ANKRLRQLQVLDKNLLQCSAKEKAPSSKSKSSASAAGSKKRKELHGTTRANALSGIWGEN
LDGAIFQAYKLDFWSNISGDAYSSFSLLIESTLADDVGNVEMSLYLVRKYIKASVSHCGQ
IRLSHEEIVKAKCFQQFFFNGMFGKLFVGSKSLGTKREFLLQTDTSSLWHPSFMFLMLPV
ETGDLVSSATVDWSAINSCACVVDFLKKNPLLELQVGEENHCNTSSGQEGTQKKETETNL
IHFANALSDKNSIEEIVVIAIHTGRIYSIVEAVKDSSAMSPFEDEASLEYATYAEYFNKK
YGIVLAHPNQPLLKLKQSHHAHNLLVNFSDEVIEKKEPNVSNVRKTKPNIHAHLPPELLV
RIDVPRSVTKSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSVLEALTTLTSAE
AFSMERLELLGDSVLKYVVSCSLYLKYPNKDEGQLSRERQSIISNSNLHRLATDRKLQGY
IRNGAFEPRRWTAPGQCSLFPVPCKCGIDSREVPLEPRFFTENMTIKIGKACDMGHRWTV
SKSVSDCAEALIGAYYVSGGLTAALHMMKWLGFDVEFDRELVNEAINRVSLRCYIPKDDE
LTELETKIRREFSSKFLLKEAITHSSVHESYSYERLEFLGDSVLDFLITRHLFNTYEKTG
PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQIKEYLMSFSEPDETGRTIPS
MQGPKALGDVVESIAGALLIDTRLDLEEVWRVFEPLLSPLVTPDKLQLPPYRELNELCDS
LGYFFRVKCANDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLKQLEMRNISR
KTGNGDDQSSMDIKLACNLSDRETPSSDSVEMQGTVVPVIGPINMKKGGPRGTLHEFCKK
HLWPMPTFDTLEDKSRTPFEFTDGNEKRTSFSSFISTITLRIPNREAVMYSGEARPDKKS
SFDSAVVELLYELERRMILTIKK
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagacgaacctcgtggaggaggaagcgattctctttctgtcaagaggaaattc
tatgaaatcgatgaagattcttctcctatgaacggcagttccgagttgtacgaggttgca
cagaccaggaacactattgctcttctggaaacaggagttgataagtttggggtaatcaac
ttgcttataaaacccattccttcttctgattcccccaaaagattcatcatttgcttggcc
cctactgtcaatctcgtcaaacagcattgctgtgagattagagcacatttaaatctgaag
gttgaagactactatggagctaaaggagttgataagtggacatcacaccgctgggaagag
gaactttttaagaacgaggttctagttatgactcctcaaatatttctagatgcccttaga
ggtggattcctgaaagtagagatggtacgccttcttgtaatagatgaatgccaccgcacc
actggcaatcatccttatgcaatgattatgaaggagttctatcacaaagctacagacaaa
ccgaggatgtttggattgactacgacagccgccattagaaaagatcaagtatcagaactg
gagaacctcatggactcgcagatttttaatcctcaagggcagaaaggggtggacaagttt
gttacaaaagtgaaagaaggtccagtattttatgacccagcacctttatgccgtctggaa
ctgaaagataagttgcgaacttcacacctcaagtttgatgcttctctgttaagtcttctt
caagaactggaaaaaggcaattgtcaggacgtggaggagaataagtttaaggcatatcaa
aagcgactgtccgctgactaccacgatattttgcattgccttgatagtcttggcctcatt
tgcgcacatttggcggctgaaatctgcttggagaaaatctcggaaaccgaaacttataac
gaatgctcaatggtgtgcaaggagtttcttagtgatgttttatccacacttgggctgttt
ttgcagaaagaagaaaagaattcggtagatttgccgcaagacaatccgtcagcagtgatt
tcgggacttgtatctcccaagttacaagaacttttccatctattggattcattgagaggt
gaaatgcaaaagccatgccttattatagttgagagaatcataactgcagaagtgatcgaa
agatacgtgaagaaacaagcctctttaggttacctttacgtcttatctttaatcggaaac
aacgcctctacccaagcattggcacagaaaatgcaagattcatttcatgttggcaaggta
aatcttgtatttatcactgacgtggtcgaagaagggtttcacatgccagattgctcatgc
atggtatgttttgacctgcccaaaacagtgtgtagttactcgcagtctcaagaactggcc
aaacagagtaactctaagtctatcatgtttcttgaaagggggaaccccagccaaagagat
catctgtatgaccttatgcgaagacaagtaccaaaagaaactccaaaccaagcgaattgt
caggacttgaaagagaacggagccacggttcatgatgaaccagcgccaaaagagcagtcg
gctaataaaaggttacgtcaactgcaagtgttggataagaatctgctacaatgcagcgcc
aaagagaaggccccctcttctaaaagtaaatcatctgcgtcggctgcaggttccaaaaag
cggaaggagttgcacgggacaacccgtgcaaacgcattgtcaggaatctggggagaaaat
cttgatggtgccatctttcaggcttataagttggacttctggagtaatatctctggggac
gcgtactctagtttctctcttctgattgagtcaacccttgccgatgatgttggaaatgtc
gagatgagcctttacttggtcaggaagtatataaaggcttctgtttcacattgtggccag
atacgtttgagtcacgaagagatagtcaaagcaaagtgttttcagcaatttttcttcaat
ggcatgtttggaaagttgtttgttggatccaagtcactgggaacaaagagagaatttttg
cttcaaactgacacaagttctctttggcatccttccttcatgtttttaatgctaccggtt
gagaccggtgatctagtttcgagtgcgacggttgattggtcagcgatcaactcctgtgcc
tgtgtagttgatttcttgaagaaaaatccccttctagaacttcaggttggtgaagaaaat
cattgcaacacctcatccggtcaggaagggacacaaaagaaagaaacggaaacgaatctg
attcattttgccaacgctttgtctgataaaaatagcatcgaagaaattgtggtcattgcg
attcacaccggaaggatatactctatagttgaagccgtcaaagattcttctgctatgagc
ccgtttgaggacgaggcctcattagaatatgctacttatgcagaatattttaataaaaag
tatgggattgtattggcgcacccgaaccagccattgttgaagttgaagcagagtcaccat
gcgcacaacctcttagtcaacttcagtgacgaagtgattgagaagaaagaaccaaacgtt
agtaatgttagaaaaacaaaacccaacatccacgctcatttgcctccggagcttttggtt
agaattgacgtgccacgttctgtgacaaaatcaatctacttactaccatcagtgatgcac
cgcctagagtctctaatgttggccagccaacttagagaagagattgattgtagcatcgat
aacttcagtatatctagtacatcggttcttgaagcacttacaacacttacatccgctgaa
gcgttttccatggaacgtttggaactgcttggggattcagtcttgaagtatgttgtgagt
tgttctctataccttaagtatcctaacaaagacgagggacaactttcgcgtgagaggcaa
tcgattatatctaactcgaatcttcaccgcttggctacagatcgcaaactgcagggatac
ataagaaacggcgcctttgaaccgcgtcggtggaccgcacctggtcaatgttctctcttt
cccgttccttgcaagtgtgggattgatagtagagaagtaccgttggagccaagattcttt
acagagaacatgactataaaaattggcaaggcctgtgacatgggtcatagatggacggtt
tcaaaatctgtatcagattgcgctgaggccctgattggtgcctattacgtcagcggtgga
ttgactgcggctcttcacatgatgaaatggcttggctttgacgttgaatttgacagagaa
ctagtgaatgaagccatcaatagagtttctctacggtgttacatccctaaagacgatgag
cttacggagttggagacaaagatccgacgtgaattctcttcaaagtttcttttgaaagag
gctatcacacactcatctgttcatgaatcctactcctacgagagattggagtttcttggc
gattccgtgcttgattttctaatcacccgacatctctttaacacctacgaaaagacaggg
cctggagagatgactgatcttcgatctgcgtgtgtaaacaacgaaaatttcgcgcaagtt
gcagtgaaaaataatctgcatacccaccttcagcgctgtgcaacggttcttgagactcag
ataaaagagtatctgatgtccttttcagagccagatgagactggtagaacaatcccttca
atgcaaggccctaaggctcttggggacgtggtggagagtatcgctggagcattgctgatc
gatacaaggttagatcttgaagaagtgtggagagtctttgagccgttgctttctccactt
gtgacacctgataaacttcagcttcctccataccgagagctcaatgagctgtgcgactct
ctcgggtatttcttccgtgtgaaatgcgcaaatgatggtgtgaaggcacaagccacgatc
cagttacagctggacgatgttcttttgactggagatggatctgaacagacaaataaactg
gcactgggaaaagcagcttcccatctgcttaagcaacttgagatgagaaacatttcacgt
aaaactgggaacggggatgatcaaagctccatggatattaaacttgcttgcaatcttagc
gacagagaaactccgtcttcagattctgtcgaaatgcagggcacagtggttccagttatt
gggcctataaacatgaagaaaggagggccccgtggaacactacatgagttctgcaagaag
catctctggccaatgcctactttcgacactttggaagacaagtctcgaactccctttgaa
ttcacagatggcaatgagaagcggactagcttcagcagtttcatatcgaccataaccctg
aggatacctaatcgtgaggctgtgatgtattctggagaagccaggcctgacaagaagagt
tccttcgactctgcagttgtggaactgctctatgagctcgagcgccgcatgatcctgact
ataaaaaagtaa
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integrated database retrieval system
