Brassica napus (rape): 106361574
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Entry
106361574 CDS
T04128
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106361574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106361574
03019 Messenger RNA biogenesis [BR:
bna03019
]
106361574
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106361574
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106361574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
106361574
NCBI-ProteinID:
XP_013656803
UniProt:
A0A817A9K8
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Position
A8:17508740..17513227
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AA seq
630 aa
AA seq
DB search
MEDADGLSFDFEGGLDSGPIQPTASVPVAPLENQSSAAVNLTPSYDHSSAAAAGAGRGRS
FRQTVCRHWLRGLCMKGDACGFLHQYDKARMPICRFFRVHGECREQDCVYKHTNEDIKEC
NMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYNYGPNRFYQPRNAAPQLGD
VKPQVQVQTQEPGNLQQQQQQPQQSQHQVSQTQTQTQTQNTADQTSHPLPRGLNRYFVVK
SNNSENFELSVQQGVWATQRSNEAKLNEAFDTVNNVILIFSVNRTRHFQGCAKMTSRIGG
YIGGGNWKNEHGTQQYGGNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQELEPS
VGEELASLLYLEPDSKLMAISIAAEAKREEEKAKGVNPESRAENPDIVPFEDNEEEEEEE
DESEEEEDGMANGPQGRGRGRGMMWPPQMPMGRGIRPMPGMGGFPLGVMNPADAFPYGPG
GYNGMPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQQFPHGGYGMMGGSGRGGP
LMGGMGNAPRGGGGGRPMYYPPATTTASSARPGPTSSNRRTPERSDDRGAVDESHEIEQF
EVGNSLRNEETESEDEDKAPRRSRHGDKRR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgccgacggactcagcttcgatttcgaaggcggtctcgactccggacctatc
cagcccacggcttccgtccccgtcgctcccctcgaaaaccaatcctccgccgccgtcaac
ctgacgccgagctacgatcactcctccgcggcggcggccggagctgggagagggcggagt
ttccgccagaccgtttgcaggcactggctccgaggtctgtgtatgaaaggcgacgcctgc
gggttcctccatcagtacgataaagctcgtatgccgatctgcagattcttccgagtgcac
ggtgaatgtagagagcaggattgcgtctataagcataccaatgaagatatcaaagaatgc
aatatgtacaagctagggttttgtcccaatggtcctgattgtaggtacaggcatgcgaag
ctgcctggaccaccacctccagttgaggaagttcttcagaagatacaacagttgacttcg
tacaactacgggcctaatagattctaccaaccacggaacgctgctccgcagttgggggat
gttaagcctcaggtgcaagttcagacgcaggagccaggtaacttgcagcagcagcagcaa
cagcctcagcaatcacaacatcaggtcagccagactcagactcagactcagacgcaaaac
actgctgaccaaacttctcatcctttgccgcgagggttaaataggtattttgtagtaaaa
agtaacaattcagaaaattttgagttatctgtgcaacaaggagtatgggctacacaaaga
agcaatgaagcgaaacttaatgaagcttttgacactgtgaataatgtgatcttgatattc
tctgtcaaccgaacacggcattttcagggctgtgctaagatgacatccagaattggtggt
tacattggtggaggaaactggaaaaatgaacatggaactcaacagtatggtgggaacttt
tcagttaaatggttaaagttgtgcgaactgtccttccacaaaacccggaatttgaggaat
ccttacaacgagaacttacctgtgaagataagcagagactgtcaagagttagagccctcc
gttggtgaggagctggcttccttgctttatctggaaccagatagcaagcttatggcaatc
tccatagctgcagaggccaaacgagaagaagagaaagcaaagggcgtgaatccagagagc
agagctgagaacccagacatcgtcccatttgaggacaacgaagaagaggaagaagaagaa
gatgaaagcgaggaggaagaagatggcatggcgaacggtcctcaaggcagaggaagagga
agagggatgatgtggcctcctcaaatgcctatgggacgtggaatcagaccaatgcccgga
atgggaggtttccctctcggggtaatgaaccctgcagatgcttttccctatggacctggt
ggctacaacggtatgccagatccatttggtatgggtccaagaccctttggaccgtatgga
ccgaggttcggcggtgatttcagaggacctgtaccggggatgatgtttcccggtaggcct
ccgcaacagtttccacatggaggttatggtatgatgggaggctcagggcgtggtggaccg
cttatgggaggaatgggaaacgctccccgaggaggaggaggaggcaggccaatgtattat
ccaccagctacaacaacagcatcatcagcacgtcctggccctacttcttccaacaggaga
acacctgagagaagcgatgacagaggggcggtggatgaatctcatgagatagagcagttt
gaggttggaaacagtttgagaaacgaagagactgaaagtgaagacgaagacaaagctcct
agacgatcaaggcatggagacaagcgtcggtaa
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integrated database retrieval system
