KEGG   Brassica napus (rape): 106362718
Entry
106362718         CDS       T04128                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
bna  Brassica napus (rape)
Pathway
bna03082  ATP-dependent chromatin remodeling
bna03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    106362718
   03083 Polycomb repressive complex
    106362718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bna03036]
    106362718
Enzymes [BR:bna01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     106362718
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     106362718
   HDAC complexes
    Sin3A-HDAC complex
     106362718
    BRAF-HDAC complex
     106362718
    REST complex
     106362718
    SHIP complex
     106362718
    MiDAC complex
     106362718
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     106362718
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    106362718
  Chromatin remodeling factors
   NuRD complex
    106362718
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 106362718
NCBI-ProteinID: XP_013658027
UniProt: A0A078FUS7
LinkDB
Position
A9:complement(4715622..4718308)
AA seq 470 aa
METDESGVSLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIVHYNLHRR
LEISRPNLADASDIGQFHSPDYVDFLRSVSPESMGDHSAARNLRRFNVGEDCPVFDGLFD
FCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFR
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDIGAEKGKYYALNVPL
NDGMDDESFRSMFRPLIQKVMDVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPG
PMENLNTPKDMEKIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEEDLEERPKPRIWS
GTANYESDSDDDEKSPPLVGYSGINDPPMDRDSTGEDDMEDEPEVNPPSS
NT seq 1413 nt   +upstreamnt  +downstreamnt
atggagacagacgagagcggcgtatcattgccgtcaggtcccgacggacgcaagcgtcga
gtcagctacttctacgagccgacgatcggcgactactactacggccaaggacacccgatg
aagcctcaccggatccgtatggctcacagcctcatcgtacactacaacctccaccgtcgc
ctcgagatcagccgccctaacctcgccgacgcctccgacatcggccagttccattccccg
gactacgtcgatttcctccgctccgtctcgccggagtccatgggcgatcactccgccgcg
cggaacctgaggcgattcaacgtcggcgaggattgtcccgtcttcgacgggcttttcgac
ttctgccgcgcttccgccggaggttcgattggcgctgcggttaagttgaaccggcaggat
gcggatattgcgattaattggggcggtgggcttcaccatgcgaagaagagtgaagcctct
gggttttgctatgtgaacgacatcgttttggggattctcgagttgcttaagatgtttagg
cgagttctctacgttgatatcgatgtgcaccatggagatggagtagaagaagcgttttac
accaccgacagagttatgacagtttcttttcacaagttcggagactttttcccaggaact
ggtcacatcagagacattggcgctgagaaagggaaatactacgctctaaatgttccatta
aacgatggtatggacgatgagagtttccgcagcatgtttagacctcttatccagaaggtt
atggatgtgtatcagccagaggcagtcgttcttcagtgcggggctgactcgttaagcggt
gatcgtttgggttgctttaacttatcagtcaagggtcatgctgattgcctccggttcttg
agatctttcaacgttcctctcatggtcttgggtggtggagggtatactatacgaaatgtt
gcccgttgctggtgttatgagactgcagttgcggttggagtagagccggacaataagctc
ccgtacaatgagtactttgagtatttcggtccagactatacgcttcacgtcgatccaggc
ccaatggagaatttgaacacaccaaaagatatggagaagataaggaacacattgctagag
caactttcgggactaatacacgcacctagcgtgcagtttcagcacacacctccagtgaat
agagttttggatgagccggaagaagacttggaggaaagaccaaagcctcggatttggagt
ggaactgcgaattatgaatcagacagtgacgatgatgagaaatcaccaccccttgttggt
tactcgggtattaatgacccacctatggacagggactctactggtgaagatgatatggaa
gatgagcctgaagtgaatccaccatcctcttaa

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