Brassica napus (rape): 106363140
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Entry
106363140 CDS
T04128
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106363140
09122 Translation
03013 Nucleocytoplasmic transport
106363140
03015 mRNA surveillance pathway
106363140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106363140
03041 Spliceosome [BR:
bna03041
]
106363140
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106363140
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106363140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
106363140
NCBI-ProteinID:
XP_048633633
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Position
A1:complement(405355..408180)
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AA seq
565 aa
AA seq
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MSSSPFPILDNRPIDKWKVTELKEELKRRRLTTQGLKLDLVRRLHDALRAEQQESETAAL
AAANQLPDVTSVPLVGGAAFTTPEPVGVKTTTTEASAAVETTPPPVFSKPDSVLDDVRDV
AALNAPVVTQEASNEQIIEMENKETFSGLDSKAQPTEVSATHNQVSEVIPVTGFEVKSDC
ISTDCVSSNNEKIQLKGNEIADNVKLEHSLSKSQEPSTVIGKSHPKISAGGGDDADMTKG
YNNNSVDAGDYEKLNLDRSSGDESMDDEPETKQNESVTSHEVVDKSVQNDLLPDKADNMD
GEKGEAPDNKSHPLVASDKRKLPVNDQEAVGHNEPAKRQRRWNSENIKVPEAQAVEPTTT
PRSAGLKRDFSRSVSSVSEDGHKERVVPPSPKEPTNFLRIDRFLRPFTLKAVQELLGKTG
NVTSFWMDTIKTHCYVSYGSVEEAAATREAVYNLQWPPNGGRLLTAEFVGPEEVKAKLEA
PPQPQTQAPSHPPATALPPPPPLAKAPPVKERHALPPPPPLVPEEQEAPIVTLDDLFKKT
KAIPRIYYLPLSDEQVAAKLAANNK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatcaccttttccaatcctggacaaccgcccaatcgacaagtggaaggttacc
gagttgaaggaagagctcaaacgacggagactcactacacaaggcttgaagctggatttg
gttaggcgtctccatgatgcccttcgtgctgagcaacaagagtctgaaactgctgctctt
gccgctgccaatcagctgcctgatgttacttctgttcctctagttggaggagcggcattc
accactccagaaccagttggggttaagacaacaaccactgaagcatcagctgccgttgag
acaacaccaccccctgtgttttctaaaccagatagtgtccttgatgatgtcagagacgta
gctgctcttaatgctccagtagttacccaagaggcatctaatgagcagattattgagatg
gagaataaggagacgtttagcgggttggattctaaggcccaacctacagaggtttctgct
acccacaaccaggtatctgaggtcatccccgttacagggtttgaggtaaaatctgattgt
atttctaccgattgtgtgtcatcaaataatgaaaaaatacaactaaagggtaacgaaatt
gctgataatgtcaaattagaacatagtcttagtaagtcccaagagccatcaacagtcatt
ggcaaatcgcatccaaagatatctgccgggggtggagatgatgcagatatgaccaaagga
tataataataatagtgtcgatgcaggcgactatgaaaagttgaatttagatagaagttct
ggtgatgagtctatggatgatgagcctgagacaaagcaaaatgaatcggttacgtctcat
gaagtggtggataagagtgtgcaaaatgacttgcttcctgacaaggctgataatatggat
ggtgagaaaggagaagcccctgataacaaaagccatccactggtggcttctgacaaaaga
aagcttcctgttaatgatcaagaagctgttggacacaatgagcctgcaaagaggcagcgc
cgatggaactctgagaatattaaagttcctgaagcacaagccgtggaacccactacaaca
ccgaggtcagctggtctgaagcgtgacttctcccgctctgtctcttcggttagtgaggat
ggacacaaggaacgcgtggttcctccatctccaaaggagcctaccaatttcctcaggatt
gatcgtttccttaggccgttcacactgaaagctgttcaagagcttttgggcaaaactgga
aatgtcactagtttctggatggacaccattaagacccactgctacgtatcatatggttca
gttgaagaagctgcagcaacaagagaagcagtgtataacctccaatggccacctaatgga
ggccgtcttctgacagctgaatttgttggaccagaggaagtgaaggccaaactagaagct
cctcctcagccacagacccaggctccttcgcatccacctgcaactgctttgccaccacca
ccgcctttggccaaagcacctccagtcaaagaacgtcatgcccttcctcctcctcctcct
ctagtcccggaggaacaagaggctcccatagtcactctggatgatcttttcaagaagaca
aaagcaatccccaggatatattacttgcccttgtcagatgagcaagttgcggctaaactt
gcagctaataacaagtga
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