Brassica napus (rape): 106365425
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Entry
106365425 CDS
T04128
Name
(RefSeq) exopolygalacturonase clone GBGE184-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106365425
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106365425
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106365425
NCBI-ProteinID:
XP_013660313
UniProt:
A0A078H505
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Position
C8:complement(49111293..49113298)
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AA seq
418 aa
AA seq
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MANGRRLLAKANDSKVGSLILMAVVFGSCLANGEYLGGGRGLSGSSGAVFDITKFGAVGD
GATNTFKAFLKAWIQVCDSPVPATLLVPAGQYLAGPVIFAGPCKSRVTVEVQGTIIATTS
GYATPEWFLFERVNDVLLTGTGTFNGKGEDIWKEGCGKKTNCNLPPTSLKFRNLKNLEVS
GITSVNSKAFHMFLVKTEFVNIHNIKLLAPAESPNTDGIHLSNADHVSITNSKMATGDDC
VSIGRGSNNVTIQGIICGPGHGISIGSLGKYKKEEDVSGIHVSNCTMIETDNGLRIKTWG
GSDPSRAADIKFENIQMQSVKNPIIIDQNYGSRGGDSQVAVSDVLFSNIRGTTITQNVVQ
LNCSKSVPCAGVNVVDVNLNYVGKKGKKQSASGGLVGAICDNAKVVFGGQLSFPTCAK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggctaatggaagaaggttgctcgctaaggcaaatgatagtaaagtaggttcgttaatt
ctaatggccgtagtgtttggttcttgcctggctaatggtgaatatctcggtggcggacgt
ggcctttccggtagttccggcgcggtctttgatattactaagtttggggccgtgggagat
ggtgccaccaacactttcaaggcgtttttgaaagcatggatccaagtgtgtgacagccct
gtaccggcaacgctactagtccctgcaggacaatacttggctggtccagttatttttgct
ggtccatgcaagagcagagtaactgtcgaagttcaaggcacgatcatcgctacaacaagt
ggatatgcaacccccgaatggttcttattcgagcgtgtcaacgatgtccttctcaccgga
accggcacattcaacggcaaaggtgaagacatatggaaagaaggttgtggcaaaaagacc
aattgcaatcttcctccaacgtctctaaaattcagaaacttgaaaaatcttgaagtcagc
ggcatcacatcggtcaactcaaaagccttccacatgttcttggtgaaaaccgagtttgtc
aacatccacaacattaagcttctcgcgcctgctgaaagtcctaatactgatggtatccat
ttgagcaatgcggaccacgttagcattacgaacagtaaaatggcgacaggagatgattgt
gtttcaattggtcgtggctccaacaatgtaaccatccaaggtattatttgtggtccagga
cacggtataagtattggtagtcttggtaagtacaagaaggaggaggacgtttccggcatt
cacgttagcaattgcacgatgatagagaccgacaatggtcttagaatcaagacttggggt
ggctcagatccaagcagggctgcggacattaaatttgaaaacattcaaatgcaaagtgtc
aagaacccaatcatcattgaccaaaactacggttcaagaggcggagattcacaagttgcc
gtaagcgatgtattgttctcgaacataagaggaacaacgattacacaaaatgttgttcag
ctcaattgcagcaaatcggtaccgtgcgcaggagtcaatgttgttgacgtgaacttgaac
tacgtaggcaagaaaggaaaaaaacagtcggcgtcaggaggtttggttggagctatttgt
gacaacgctaaggttgtctttggtggacaacttagcttcccaacgtgtgccaaatga
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