Brassica napus (rape): 106365441
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Entry
106365441 CDS
T04128
Name
(RefSeq) probable pectate lyase 6
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106365441
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106365441
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GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
RRXRR
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
106365441
NCBI-ProteinID:
XP_013660326
UniProt:
A0A078I565
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All DBs
Position
A6:complement(26140325..26142874)
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AA seq
459 aa
AA seq
DB search
MASAHLNLGSYVFAFVSLSLAVVAPSVQGHVAVYDEYWTQRQTDALRETIKSYDPNPFNV
TDHFNYHAALAMETTGADNGTRRELRQVRRGRKTRRRGGRHHSLNAIDKCWRGDKNWHKN
RKKLADCVLGFGRKTTGGKKGQFYVVTDASDHDLINPKPGTLRHAVTRDRPLWIIFGRSM
IIKLQQELIITHDKTIDGRGANVHIMGGAGLTLQFVKNVIIHNIHIKHIKCGAGGMIRDC
EHHVGQRSKSDGDGINIFGATNIWIDHVSMTHCSDGMIDAIMGSTAITISNSHLTDHNEV
LLFGGKDGDVIDKKMQITVAFNHFGKRLVQRMPRVRYGLVHVVNNDYTHWEMYAIGGNKN
PTIISQGNRFIAPHKETCKQVTKREYTPYTEWKSWNWQSERDYFLNGAYFVNSGRANAWS
PAPKNPIHRKFAIRPQSGTGVRRLTKDAGTLGCTPGKSC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgctcatttgaatcttgggagctacgtcttcgcctttgtctcgttatctcta
gccgtcgtggctccatcggttcaaggtcacgtcgcggtatacgatgaatactggacccaa
cgccaaaccgacgcattgcgagaaactataaaatcttatgacccgaacccgtttaacgtc
acggaccactttaactaccatgccgcattagcaatggagacgactggtgcagacaacgga
acaaggagagagctccgacaagttagacgcggtcggaaaacaaggagacgtggcggaagg
caccactcccttaacgctatcgataaatgctggcgaggcgacaaaaactggcacaaaaac
cgaaaaaagctagcggactgcgtcctaggatttggtcggaaaacaaccggaggcaaaaag
ggacagttctacgtagtcaccgacgcatctgaccacgatctcatcaaccccaagccagga
actctaagacacgcagtgactcgcgacagaccgctatggatcatattcggtagatccatg
atcataaaactgcagcaagaactgatcataacacacgataaaactatcgatggtcgagga
gcgaatgtacatataatgggaggtgcaggtttaacgttacagttcgtgaagaatgtgatc
atacacaatattcatatcaaacacattaaatgtggggctggtgggatgatcagagactgt
gaacatcatgttgggcagcgttcaaagagtgatggtgatgggatcaatattttcggagcc
acgaatatttggatcgatcatgtctccatgactcattgttctgatgggatgatcgatgcc
attatgggatcgaccgccattactatctccaactcccatttaaccgaccataacgaggtg
ctgttgtttgggggtaaagacggggatgtgatcgacaagaaaatgcagataacggttgcg
tttaaccattttggtaagagattggtccaaagaatgccaagggtcagatacggtttggtc
catgtagtgaacaatgactacactcactgggaaatgtatgctattggtgggaacaagaac
cctaccattataagtcaaggcaaccgtttcattgctcctcataaagaaacctgcaagcag
gttacaaagagagagtatacgccttatacagagtggaagtcatggaactggcagtcagag
agagattacttcttgaacggagcttactttgtaaattcaggaagggcaaacgcgtggagc
cctgccccgaaaaacccaatccatagaaagtttgcgatccggcctcaatcaggaacaggt
gtaagaagactcactaaggatgctggtacgcttggttgtacaccaggcaagtcctgctga
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