Brassica napus (rape): 106365596
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Entry
106365596 CDS
T04128
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106365596
03015 mRNA surveillance pathway
106365596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106365596
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106365596
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
106365596
NCBI-ProteinID:
XP_013660481
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Position
C5:complement(8665440..8668790)
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AA seq
398 aa
AA seq
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MARPSRGRRSPSVSGSSSRSTSRSRSSLSRSVSRSRSRSRSLSSSSSSSPSRSVSSGSRS
PPPPRGKSSAGPASRRGRSPPPSPSRKAAAPVQESLVLHVDSLSRNVNEGHLKEIFGNFG
EVVHVELAMDRAVNLPKGYAYVEFKAREDAEKAQLFMDGGQIDGNVVKAKFTLPPRQKLS
PPPKPVSSAPKREAPKSDSAGADIEKDGPRRPRETSPQRKPVLSPRRRSPLPRRGASPRR
LPDSPPRRRPSSPIRRRGDTPPRRRAASPSSPPRRRRSPPRGSPRRIRGSPVRRRSPPPL
RRRSPPRRLRSPLRRSPIRRRSRSPVRRPVRYRSRSISPRRGRGPAGRRGRSSSYSSSPS
PRRVPRKISRSRSPRRPLRGKRSSSNSSSSSSPPPRKT
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcgagaccaagtcgtggacgtcgttcaccttccgtctctgggtcttcctctcgttcc
acctccagatctcgttcgagtctgtccaggtctgtttcgcgctcccgttcccgttccaga
tcgctctcgtcttcttcttcttcttctccttccaggagcgttagctctgggagtcgcagt
cctcctccacctcgtggtaaaagttctgctgggcctgctagtaggcgaggtcgctctcct
cctccttcaccctctaggaaagctgctgcacctgttcaagaatcacttgttctccatgtt
gattctctcagcaggaatgtgaatgaaggccatctcaaagaaatatttggcaactttggt
gaagttgtacatgtggagcttgccatggatcgggctgttaatcttccaaaagggtatgct
tatgttgagttcaaggcaagagaggatgctgagaaagctcagctgtttatggatggtggt
cagattgatggaaatgttgtcaaagcaaagttcacactaccaccgcgtcagaaattatcc
ccaccccctaaacctgtctcaagtgcaccaaaaagagaggctccaaaatctgatagtgcc
ggtgctgacattgagaaagatgggcccaggcgcccaagagagacttctccgcaacggaaa
ccagtactttctccaagaaggcgatcacctctgcctaggagaggtgcatcacctaggaga
ttacctgattctccccctcgtcgaaggccaagctctcctatccgccgtcgtggtgataca
ccacctagacgcagggctgcatcgccgtcttcccctccaagacggcgtagatctcctcca
aggggctcccctagaagaatccgtggcagccctgttcgcagacggtctcctcctcctcta
agacgaaggtcacctccaaggagactacgcagtcctctaagaagatctccaatccgcaga
cgtagccgatccccagttcgtagacctgttcgctatcgttcaaggtccatttcaccccgc
aggggacgaggtccagctgggagacgtgggaggtcatcttcatactctagttcgccaagt
cccagaagggttcctaggaagatttcaaggagccgcagtcctagaaggccactgagaggg
aaaagaagcagcagtaacagtagcagcagcagctcaccgcctcctcgcaaaacataa
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