Brassica napus (rape): 106365880
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Entry
106365880 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 3, chloroplastic
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106365880
03036 Chromosome and associated proteins [BR:
bna03036
]
106365880
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106365880
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
106365880
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106365880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
zf-CCHC
CMS1
YgbB
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106365880
NCBI-ProteinID:
XP_013660844
LinkDB
All DBs
Position
A9:3392615..3397025
Genome browser
AA seq
741 aa
AA seq
DB search
MASTVGVPSLYQVPHLETSKPTSKKRSTSLSLSLDNPFFSSPLSLRRTRLIHSSLLPPSA
VATPNSVLSEEAFKSLGLSDEFDLEVSSEDDGEELAISKLRLPQRLGESLEKRGITHLFP
IQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKRLTEQSGDYSAFRKSGRLPKFLVLA
PTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALSRGVDVVVGTPGRIIDLIEGRS
LKLGEVEYLVLDEADQMLAVGFEEAVESILENLPQKRQSMLFSATMPTWVKKLARKYLDN
PLNIDLVGDQDEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEV
SLALSNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYEL
PNDPETFVHRSGRTGRAGKEGSAILMHSSSQKRTVRSLERDVGCRFEFISPPTVGDLLEA
SADQLVATLNGVHPESIKFFSATAQKLFEEKGTDALAAALAHLSGFSQPPSSRSLLSHEQ
GWVTLQLIRDPTNSRGFLSARSVTGFLSDVYRPAADEVGKIFMIADERVQGAVFDLPEDI
AKELLEKEVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRMPRGGGGSRGSRFGGRGG
SSRGRDDDRRSRSSGGGGSSWSRGGGGSRGSSDDWLIGGGSERRSSSSSRGPSRERSFGG
ACFTCGSSGHRAADCPDKRGF
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacggtgggagtcccatcactataccaagtccctcaccttgaaacctccaaa
cccacttcgaagaagaggtccacttccttatctctctctctagataaccctttcttctcc
tctcccttatctctccgaagaactcgtcttatccactcctcacttcttcctccctccgcc
gtggccactcccaactccgttctcagcgaggaagctttcaaaagccttggcctttccgac
gagttcgacctcgaggtctcctccgaagacgatggtgaagagctcgctatctcgaagctt
cgtttgcctcagcgtctcggtgagtctctggagaagcgtggtatcactcacctcttcccc
attcagagggctgtgttggttcctgcgctggaaggacgagacattatagctcgtgcaaag
acgggaactgggaagactttggctttcggtatccctatcatcaaacgcctcactgaacaa
tctggagactactctgctttcaggaagtctggtcgtcttcctaagttccttgtccttgca
cctacacgagaactagctaagcaagtggagaaggagattaaggagtctgcaccttatcta
agcaccgtttgtgtatacggtggtgtctcttacaccattcagcagagtgctttgtctcgt
ggtgttgatgttgttgttggaactcctggaaggatcattgacttgatagaaggaaggagc
ctcaaattgggtgaagttgagtacttggtgcttgatgaagctgaccagatgcttgctgtt
ggttttgaggaagctgtggaatcgattcttgagaatcttccacagaagagacagagtatg
cttttctcagctactatgcctacttgggtgaagaagttggcgaggaagtatcttgacaat
cccttgaatatcgatctggttggtgaccaagatgagaagcttgcggaggggatcaagctc
tatgcaatctcagctacatcaacatcaaagcgcactattctaagcgaccttataacagta
tatgcaaagggtggcaagaccattgtttttacccaaacaaaaagagatgcagatgaggtc
tctctagcattatcaaacagcatagcttccgaagcacttcatggagatatctctcagcat
caaagagagagaacactcaacggtttccgccaagggaaattcacagttctagttgctact
gatgttgcatctcgtggacttgacatcccaaacgtagatctagttatccactacgaactt
cctaatgaccctgagacttttgtgcaccggtctggtcgtaccgggcgtgcagggaaagaa
ggctcagctattctcatgcactctagtagccaaaagagaacggtgaggtctctggagcgt
gacgtgggctgcagatttgagtttattagcccaccaactgttggagacttgttggaggcg
tcagcagaccaattggtggcaactctgaacggcgttcaccctgagtctataaagtttttc
tcagcaactgctcaaaaactatttgaggaaaaaggaacagatgccttagctgcagctctg
gctcacctgagcggtttctctcagccaccttcatctagatctctcctcagtcatgagcag
ggatgggtaactttgcaactgatacgagatccgacaaactctagaggcttcctgtctgca
aggtctgtcactggttttctttcagatgtttaccgtccagctgcagatgaagttggaaaa
atcttcatgatcgcagatgaaagggtgcaaggagctgtttttgatctgccagaggacata
gcgaaagagctgttagagaaagaagtgccagaaggaaacagtctatccatgattacaaag
ttgcctccgttgcaagatgatggaccgtctagtgataactatggacggttctctagcaga
gacaggatgcctagaggaggaggaggttcaagagggtcaagatttggcggtagaggaggg
tcatcaagaggacgtgatgatgatagaagaagtagaagcagtggtggtggaggaagcagc
tggtcccgtggtggtggtggttccagaggaagttctgatgattggttgattggtggtggt
agtgagagaagatcatcatcaagcagcagaggtccttcccgggagaggagttttggaggt
gcttgcttcacttgtggaagctcaggacacagggcagctgattgtcctgacaagagaggg
ttttaa
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