Brassica napus (rape): 106365904
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Entry
106365904 CDS
T04128
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106365904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106365904
03036 Chromosome and associated proteins [BR:
bna03036
]
106365904
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106365904
Coactivators
SAGA/TFTC/STAGA complex
106365904
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106365904
STAGA complex
106365904
TFTC complex
106365904
SAGA complex
106365904
SLIK complex
106365904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
eIF2A
Beta-prop_NWD2_C
RAB3GAP2_N
WD40_like
LisH
Cytochrom_D1
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
106365904
NCBI-ProteinID:
XP_013660872
LinkDB
All DBs
Position
A9:complement(3652390..3657216)
Genome browser
AA seq
668 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNSAAKQLQEALHHNNGGTFNSTDYHNDPELTKLIRSFSQSE
NDPTRYRDGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTREARAFFNSFR
KDHEMIHLRDLQKLEGVLVPSHLEEMEFARSLRQSKVNIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPNSSSDDIDAVTIVGSFQETADHINQKEIQWGLLEDSLEDRLE
KTGSLLSDSEKGQGESKDGDVDDSKKRSNEIGKQGSSLKKLKKDKAGNATAKVARQETSI
VSPAPRVKPELALPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCASIS
HDGSLVAGGFSDSSIKVWNMAKIGQAGSGALQGESDTNDQNVGPNGRRNYTLLLGHSGPV
YSATFSPPGDFVLSSSADTTIRLWSTQLNANLVCYKGHNYPVWDVQFSPFGHYFASCSHD
RTARIWSMDRVQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFI
GHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLL
ASGSADCTVKLWDVTSSTKLTKAEEKNGNTNRLRSLRTFPTKSTPVHALRFSRRNLLFAA
GALSKPAS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtggacgagttcgtaatgggctacttgaagaagaaaggcttcaac
agcgcagctaaacagcttcaagaagctcttcaccacaacaatggcggcaccttcaattcc
acggattaccataacgatcctgagctcaccaagctcatccgctccttctcccaatcagag
aatgatccaactcggtaccgtgatggttacagcaaacttaggtcatgggcatataactcg
ttggatctatataaacatgagttgctccgagtgatgtatcctgtgtttattcattgttac
atggatcttgttggtaaaggacacactcgagaagcgagagccttctttaacagcttccgg
aaagatcatgaaatgatacatttacgggatcttcagaagctggaaggcgttcttgttcct
tctcatctagaggagatggagtttgctcgttctcttagacaaagcaaggtcaacatcaag
atttgtcagtattcatatgatctgttgcttcagtatctacataggacggaatctacttta
atgcttggtattattaacgagcacatcaatttccaagtctactcgggacaaccaaattcc
tcatctgatgacatagacgctgtcaccattgttgggagttttcaggagacagctgatcac
attaatcaaaaagaaatacagtggggattgcttgaagactcgctcgaagatcgcctcgag
aagacgggaagtctactgtctgattctgagaagggacaaggagaaagtaaagacggggac
gtggacgatagtaagaaaagatccaacgaaattggaaagcaaggctcttccttaaaaaag
ttaaagaaggacaaagcaggaaatgcaacagcaaaggttgcacgtcaggagaccagcata
gtatcgccggcaccacgtgtgaaaccggaacttgccttgccagtcatgtcaacggatgta
gaagaatccatccttgaagacctgagaaaccgtgtgcagttgagtagtgttgcaatgcca
tctgtcagcttttatacatttgttaatactcataacggcttaaactgtgcatctatatct
catgatggttctctggttgctggtggcttctcagattcatcaataaaggtctggaacatg
gcgaagataggacaagctggtagtggtgctttgcaaggtgaaagtgatacaaatgatcaa
aacgttggaccaaatggcagaagaaattatacattattactgggtcactcagggccagtt
tactcggccactttcagtccacctggagattttgtattatcttcttcagcagatacaacg
atacggctgtggagcacacaactaaatgccaatcttgtgtgctacaaaggtcacaattac
cctgtatgggatgtccagtttagccctttcgggcattactttgcaagctgttctcatgat
cgcactgcacggatttggtcgatggaccgagtacaacctctgcggataatggcagggcat
ctatctgatgttgattgtgtacagtggcatcccaattgtaactacattgcgaccggttct
agtgataagacggtgagactctgggatgtgcaaactggggaatgtgtcaggatattcatt
gggcacaggagtatggttttatcattggcgatgtcaccagatgggagatatatggcctct
ggtgatgaagatggaaccataatgatgtgggacctctcaacagctcgctgcatcacacct
ctcatgggccataattcatgtgtatggagtctctcttacagcggcgaggggtctcttctg
gcttctggatctgcggactgcacagtgaaactgtgggacgtcacttcaagcaccaaattg
accaaggccgaggaaaaaaatggaaacacaaacagactgcgctcactcaggactttcccc
acgaagtccacaccagttcacgctctcagattttctcggagaaatctgctgtttgctgca
ggagcgctctcaaaacccgcaagctga
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