Brassica napus (rape): 106365926
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Entry
106365926 CDS
T04128
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106365926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106365926
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106365926
Complex C
U5 SnRNP specific factors
106365926
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
106365926
NCBI-ProteinID:
XP_048601483
LinkDB
All DBs
Position
C1:complement(8585457..8595169)
Genome browser
AA seq
2360 aa
AA seq
DB search
MWNNNDAMPLAPPGTGGSMIPPPHPSYTALPPHPSNPTAPPVEPTPEEAEAKLEEKARKW
MQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPH
AVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKRD
RRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHTWFYDHKPLVKTK
LINGPSYRKWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGPK
FEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIGFPHLYNNRPRKVKLCVYHSPMVM
YIKTEDPDLPAFYYDPLLHPISNTNKERRERNVFEDDGEDEFILPEGVEPLLKDTHLYTD
TTAAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVL
NELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNYL
HLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLAD
GLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRV
WLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDA
MPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHY
NRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVHW
LESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHE
ALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLF
PNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRL
LRLVLDHNIADYVSAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQFYGLLLDLLLLGLT
RASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLTE
HPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVS
VYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDE
HMKVFENRARQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKI
QTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRS
GMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRG
IPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI
QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFT
LWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQ
VLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDVFDQK
ASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAF
GNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQ
IIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQ
LAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQA
CLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLK
PDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAE
ITPPSQQRQQIAEIEKQAKEASQINAVTTRTTNVHGEELIVTTVSPYEQTAFGSKTDWRV
RAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNVLKKFICIADLRTQIAGYLYGISPPD
NPQVKEIRCVVMVPQWGSHQHLNLPSALPEHEFLNDLEPLGWLHTQPNELPQLSPQDVTS
HSRILENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQTGYEWGRLNKDTGGNPHGYLPTH
YEKVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVGMKYSVKLGSPKEYYHEEHRPTHFL
EFSNMEEADIAEGDREDTFA
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgacgctatgccgttagcccctcccggcaccggcggctcgatgatt
ccgccaccgcatccttcttacaccgcgcttccgccgcatccttctaatccgactgctccg
ccggtcgagcctactcccgaggaagccgaggcgaagctcgaggagaaggcgcgcaagtgg
atgcagctgaactcgaaacgctacggcgacaagaggaagttcggattcgtggaaactcag
aaggaggacatgccacctgagcacgtcaggaagattatcagggatcatggtgatatgtca
tcgaagaagtttcgtcacgataaacgtgtataccttggagctcttaagttcgtccctcac
gctgttttcaagctactggagaatatgcctatgccttgggagcaggttagagatgttaag
gttctgtaccacatcaccggagctattacattcgttaacgagattccatgggttgtggaa
cctatttacatggctcagtggggcactatgtggattatgatgcgaagggagaagagggat
cgtcgtcatttcaagaggatgcggtttccaccgtttgatgatgaggagcctccactggac
tacgcagacaacttgttggacgttgatcctcttgagccgattcagttggagctagacgag
gaggaagattctgctgtacacacctggttctatgaccacaagccgctagtaaagactaaa
ctgattaatggtcccagttaccggaagtggaatctctctcttccaattatggctaccctt
cacagacttgcgggccagttgttgtcggatttgatcgatcgcaactacttctacttgttt
gacatgccgtcattcttcaccgccaaggctctgaacatgtgcatacctggtgggcctaag
tttgagcctttgtaccgtgatatggagaaaggggatgaagactggaatgagttcaatgac
atcaacaagcttatcattcgttcccctcttcgaactgagtacagaataggttttcctcac
ctgtacaacaatcgtcccaggaaagttaaactctgtgtgtatcacagtcctatggtgatg
tatataaagaccgaggatcctgatcttcctgcgttttattatgatccgttgcttcacccg
ataagcaacaccaataaggaaaggcgtgaaaggaacgtttttgaagatgatggtgaggat
gagtttatcttaccagagggagtggaacctttactgaaagacacccacctctacactgac
actacagctgctggcatttcattgttgtttgccccacgacctttcaatatgaggtctggg
agaacaaggcggtcagaagatattcccctggtgtcagagtggttcaaggagcactgtcct
ccggcttatccggttaaagttcgagttagttaccaaaagcttttgaagtgctatgtcctg
aatgagttgcaccatagaccacctaaagcccagaagaagaagcacttattccgctctctt
gcagctacaaagtttttccagagtactgagttggattgggttgaagtgggtctgcaagtc
tgcaggcagggatataatatgctgaacctgctgatccacaggaagaatttgaactacctg
caccttgactacaacttcaacttgaagcctgttaaaacattgactacaaaagagcgaaag
aagtcacgttttgggaacgccttccatctctgccgtgagatcctccggctgacaaagctt
gtcgttgatgcgaatgtccagttccgacttggaaatgttgatgctttccaattggctgac
ggtctgcagtatattttctcccatgttggccagttgacgggtatgtatcgttataaatac
agactgatgaggcagattaggatgtgcaaggatttgaagcacttgatatattaccgtttc
aataccggtcctgtgggtaagggaccagggtgtggattttgggctccaatgtggagggta
tggttgtttttccttcgtggaatagttcctcttcttgaacgatggttagggaatcttctt
gctcgtcagtttgaggggcgtcattcaaaaggagttgccaaaactgtcacgaaacagaga
gttgaaagccacttcgatttggaactgcgagctgctgtcatgcatgacgttcttgatgcc
atgccagagggtatcaagcaaaacaaagctcggacaatattacagcacctcagcgaggcg
tggcgatgttggaaagctaatatcccgtggaaggtccctgggttgcccgtgccaattgag
aatatgatcctgcgttatgtcaagtctaaggctgattggtggacaaatgttgctcactac
aatcgtgagcgtatcagaagaggggctactgttgataagactgtttgtagaaagaatctg
ggaaggttgactcgactttggctaaaggctgaacaggaacggcagcacaattacctgaaa
gatggtccatatgtcactccagaggaagcactagcaatttatacaactactgtccattgg
ctggaatcgaggaaattttctccaattccattcccaccattgtcttacaaacatgacaca
aagttgcttatcctggcccttgagagactgaaagaatcatacagtgttgccgtgaggttg
aatcagcagcagcgagaggagcttggtctgatagaacaagcgtatgacaatcctcatgaa
gctctgtcacgaattaaacgtcatcttctcacccagcgtggcttcaaagaggttggcata
gagtttatggatctatacagctacctgattccagtttatgagatagagcctctggagaaa
attactgatgcctaccttgaccaatacttgtggtacgagggtgataagcgccacttgttc
ccaaactggatcaagccagcagactcagagccgccaccacttctggtttacaagtggtgt
caaggtatcaataatttacaaggcatatgggacacaggagatggacaatgtgtggtgatg
ctccagactaagtttgaaaaattctttgagaagattgatttgaccatgttgaacaggctg
cttcgtttggttcttgaccacaatattgcggattatgtgtctgccaagaataacgtggtt
ctgtcttacaaagatatgagtcatactaactcgtatggtctgattaggggacttcagttt
gcatcttttgttgttcagttttatggactattgcttgatctgttgcttcttggtttgact
cgggcaagtgaaattgctgggccaccacagatgcctaacgagtttatgacgttttgggat
acaaaagtggagacacggcatcccataagactgtattctcggtatatagacaaagttcat
ataatgttcaaatttacccatgaagaagccagagatcttattcagcgttatcttactgag
catcctgatcccaacaatgaaaatatggtgggatacaacaataagaagtgctggccaaga
gatgcaaggatgaggttgatgaaacatgatgtcaatcttggtagaagtgtcttctgggac
atgaagaatcgtcttcctcggagcatcactactttggagtgggagaatggctttgtctct
gtatacagcaaggataatcccaacctgctcttcagcatgtgtggatttgaagttcgcata
cttccaaaaatcaggatgactcaggaagctttcagcaacacaagagatggtgtctggaat
ctgcaaaatgagcagaccaaggagaggactgccgttgcttttctccgagttgatgatgaa
catatgaaggtgtttgagaatcgtgcgaggcagatccttatgtcttcaggatcaaccacc
ttcaccaaaattgtcaataaatggaatacagctctaattggtctcatgacttactttcgt
gaagccactgtgcatacgcaagagctcttggatctactggtcaagtgtgaaaacaaaatt
caaactaggattaagatagggctgaactcaaagatgcctagtcggtttcctccagttatc
ttctacactccaaaggaaattggtgggctgggaatgttgtcaatgggtcatattttgatt
ccccaaagtgaccttcggtacagcaagcagacagatgttggggtaacccactttaggagt
ggaatgagccatgaggaagatcagcttataccaaatctatatcgttacatacagccatgg
gagagtgagtttattgattctcagcgggtgtgggcagagtatgctttaaagcggcaggaa
gcacaggcccaaaataggcgtcttacattggaggatttggaggactcttgggatagggga
attcctcgaataaataccctctttcagaaggataggcacacgttagcgtatgataaaggt
tggagggttcggaccgactttaagcagtaccaagtcctcaagcaaaatcctttctggtgg
acgcaccagagacatgatgggaagctgtggaatttaaacaattaccgaactgatgttatc
caagctcttggaggtgttgagggtatccttgagcacactttattcaaggggacatatttc
ccaacatgggagggtcttttctgggagaaggcatctgggtttgaggagtcgatgaaatat
aagaagctgacgaatgcacagaggtctggtctgaaccagattccaaatagaagattcacg
ctttggtggtcgccaacaataaatcgagcgaatgtttatgtgggtttccaagtgcagttg
gatctgacaggaatttttatgcatggaaagattcctacactgaagatatctctgattcag
attttccgtgcccatttgtggcaaaagatccatgagagtgtggttatggatctttgtcaa
gtattggaccaagagttggatgctttggagattgaaactgttcagaaggagacaattcat
ccaaggaagagttataagatgaacagctcttgcgctgatgttcttctgtttgctgcccat
aaatggccaatgtcaaaaccaagcctggttgctgagtcaaaggatgtgttcgaccagaaa
gctagcaacaagtattggatagatgtgcaacttcggtggggagattatgattcccatgat
attgagcgttatactagggccaaattcatggattatacaactgataacatgtcaatctat
ccatctccaacaggtgtaatgattgggcttgatctggcatataatttacattctgccttt
ggcaattggttcccaggttctaaacctcttcttgctcaagcgatgaacaagatcatgaag
tctaatccagctctgtacgtgttgagagagaggataaggaaaggtttgcaattgtactca
tctgagcctacagagccatatttgtcatcgcaaaactatggtgaaatattcagcaatcaa
attatatggtttgtcgatgataccaatgtctatcgtgtcacaattcacaagacatttgaa
ggaaatttaacaacaaagcctatcaatggtgcgatctttatttttaatccaagaactggg
cagctattcctgaaggttatccatacaagcgtttgggctggtcagaagcgtcttggtcag
ctagcgaaatggaaaactgctgaagaggtggctgcccttgtgcggtctctccctgttgaa
gaacagccaaaacaagttattgttactcgcaaaggaatgctcgatccccttgaggtccac
ttactggatttccccaacattgttatcaagggaagtgaactgcagcttccgttccaggcg
tgccttaagattgagaaatttggtgatctgattttgaaggccacagaaccacagatggtc
ctattcaatatttatgatgattggttgaagagtatctcttcttacactgccttttcaaga
ctcattctgatccttcgtgcgcttcacgtgaataatgagaaggctaagatgttgttgaag
cccgacaaatctgtcgtcactgagccacatcacatctggccctctctcactgacgaccag
tggatgaaggtggaggtagctcttagggatcttatcctatctgactacgcaaagaagaac
aatgtgaatacctcagctctgacacaatcagagatcagagatattatccttggagctgag
attaccccaccctctcaacagaggcaacagatagctgagattgagaaacaggcaaaagaa
gccagccagattaatgctgtcacaaccagaacgacaaatgttcatggtgaggagctcatt
gtcactactgttagcccctacgagcaaactgcattcggttccaagacggattggcgtgtg
cgtgcaatatcagctaccaacctctacctcagagtcaatcacatctacgtgaactcggat
gacataaaggagaccggatacacatacatcatgccgaagaacgtcctgaagaagttcata
tgcatagcagatcttcgcactcaaattgctggatatctctatggtataagcccccctgat
aatccccaggtgaaggaaatccgttgtgttgtgatggtgccgcagtggggaagtcatcag
caccttaacctgccgtcagctcttcctgagcatgaattcttaaatgatctcgagccattg
ggatggctgcacactcaacctaacgagctccctcagttgtcaccacaggatgttacctct
cattcccgcattcttgagaacaacaagcaatgggatggagaaaaatgtattatcctgaca
tgcagtttcacaccgggatcctgctcactgacatcatataagttgacccaaaccggatat
gagtggggacgtctcaacaaggacacaggcggcaatcctcatggctaccttcccacccat
tatgagaaggttcaaatgctattgagtgaccggttcctcgggttttacatggttcctgag
aacggaccgtggaactacaactttatgggagtgaagcacacggtgggaatgaaatacagc
gtcaaacttggatccccaaaggagtactatcacgaggaacatcgacccactcatttcctg
gagttcagcaacatggaggaggctgacatcgctgagggagatcgtgaagacacctttgct
tga
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integrated database retrieval system
