Brassica napus (rape): 106365985
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Entry
106365985 CDS
T04128
Name
(RefSeq) coatomer subunit alpha-2-like
KO
K05236
coatomer subunit alpha
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106365985
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bna04147
]
106365985
Membrane trafficking [BR:
bna04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
106365985
Exosome [BR:
bna04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106365985
Exosomal proteins of bladder cancer cells
106365985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
ANAPC4_WD40
TPR_COPA_B
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_SCAP
NBCH_WD40
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
106365985
NCBI-ProteinID:
XP_048597502
LinkDB
All DBs
Position
A9:complement(39900110..39904594)
Genome browser
AA seq
1062 aa
AA seq
DB search
MLTKFETSSNQVRGLSFHPKRPWILSSLHTGVIQLWDYRMATLIDTFEEHDGPVRGVHFH
ISQPLFVSGGDDYKIKVWNYKTHKCLFTLLGHLDYIRTVQFHHECPWIVSASDDQTIRIW
NWQSRTCVSVLAGHNHYVMCASFHPKEDLLVSASLDQTVRVWDIAPLRNKKKTPLADDDD
IMGLTQMNSDLFDATVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRKVKLWRTNETKAWE
VDTLRGHSSNVSSVMFHAKHDVIVSNSEDKTIRVWDATKRTEIKTFRRENDRFWILAAHP
ETNLLAAGHDSGLIVFKLERERPAFALSGDSLLYAKDGFLRRYEYSTQKDSQVIPIQRPR
TVSHSPTENAALISSDLDGGSYELYIIRSGTVQRDAKRVSGGGSAVFIARKRFAVLDKST
GQEEVLVVKNLKNEVVKKIPLPIPTYAIFYAGTGTLLCRCEDKVVMFDLTQRLVLGEVHT
PSVRHVVWSNDMESVALLSKHTIILASKKELVIQCTLHETTTRVKSGAWDDDNGVFIYTT
LNHVKYCLPNGDSGIIRTLVVPIYITKVSSDKIFFLDRDGRNKEITVNATEYMFKLALMR
KRFDHVARMIEGSRISGQAMVAYMQQKGFPEVALHFVEEEGHERVRFNLAIESGNMSVAV
ASATKINEKDYWFRLGVEALRQGGNSSIVEFAYQQTRSIERLSFLYLITGNLEKLSKLMK
KKDVMGQFQNALYLGDVKERVKILEKGGLLPLAYITASVHGLKDIAERLSIALGDDVPSL
PQGKTHSLLMPPIPVVCGGDWPLLRVMKGIFEGGLESGNDDVEEGDWGDALDMVDVEEDG
EGSGWGGLELLDTPFMTPSQGMDVSQIWSQESPLAAEQAAAGSFDTAMSLLHRQLGIKNF
APLKSMLLDLFSGSHSYLPAFSSSPVLTSLTANLQPPHLRLALLSAMGVCYKARNLATAY
NFAKRLLETNPTESQAKTARQIVQAAERNMTDATELNYDFRNPFVICGSTYVPIYRGQEN
VSCPYCTARFVPSQEGKICGICDLAVIGADASGLLCSPSQVR
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagaccagtagcaaccaagttagaggtttgagctttcaccctaag
cgaccatggattctctccagtttgcacactggcgtcatccagctctgggattatcgtatg
gctactttgatcgatacgtttgaggaacacgacggacctgttcgtggtgttcattttcac
atttctcagcctctcttcgtctccggaggtgatgattacaagattaaagtttggaactac
aaaacacacaagtgtctcttcactcttcttggccacctcgattacatccgcacggttcag
ttccatcacgagtgcccttggattgtcagcgccagcgacgaccagaccatccgcatatgg
aactggcaatcacggacttgtgtctctgtcttggctggccacaaccattatgttatgtgt
gcttctttccatccaaaggaagacctcctcgtatcggcttccttagatcagactgtccgt
gtttgggatattgctcctctccggaataagaagaagactcctcttgctgatgacgacgac
atcatggggttgactcagatgaacagtgatctttttgatgccacagtcaagtacgtcctt
gaaggtcacgacagaggtgtaaactgggctgcttttcatcccactctgcctcttattgtc
tccggtgcagatgaccgcaaagtaaaactgtggcgtaccaacgaaactaaagcatgggaa
gtggatacactgcgagggcattcgagtaacgtttcgtcagttatgttccacgcgaaacat
gacgtaattgtatccaactccgaggataagaccatccgtgtctgggacgctaccaagcga
actgaaatcaagactttccgtcgcgaaaacgatagattctggatactcgcagctcatccc
gagactaatctactagcagccggacacgacagcggtttgatcgtcttcaaacttgaaaga
gagcgtcctgcgtttgctttgagtggtgattctttgctctacgccaaggatggtttcttg
cgtcgctacgaatattcaactcagaaagactcgcaagttatccctatacagcgtccaagg
actgtatcacacagtcctacggaaaatgcagctttgatcagctcagatcttgatggtggt
tcttacgagctgtacatcataaggagtggtactgtgcagcgggatgcaaagagggtgagt
ggtggtggttctgcggtattcatcgctcgtaagcggtttgctgttctcgataaaagcacc
ggccaggaggaggtgctagtagtgaagaatctaaagaacgaggtggttaaaaagattcct
ctccctattccaacatatgctatcttttacgctgggaccggaactctgctatgcagatgt
gaggataaagtggttatgttcgaccttacgcaaagacttgtcctcggtgaagttcacaca
ccgtccgttaggcatgttgtttggtctaatgatatggagagtgttgctttgctcagcaaa
catactatcattctcgccagcaaaaaggaacttgtcatccagtgcacgctccacgagacg
acgacacgtgtgaagagtggagcttgggatgacgacaacggtgtcttcatttacaccact
ttgaaccatgtcaagtactgtcttcctaatggagacagtggaatcatccgaaccctggtt
gtccctatctatatcaccaaggtttcgagtgataaaatctttttcttggatcgggatggg
agaaacaaggagatcacagttaatgctactgagtacatgttcaagcttgcgctgatgagg
aagagatttgatcatgtagcgaggatgatagaaggctcccggataagtgggcaggctatg
gttgcttacatgcagcagaaagggttccctgaagttgcattacattttgttgaagaagaa
ggccacgagagggtccggttcaacctggctattgaaagtggaaacatgagtgtagctgtt
gcctccgctacaaagattaacgagaaagattactggtttagacttggagtggaggctctt
cgccaaggaggcaactctagtatcgtcgagtttgcgtaccagcagacgaggagcatcgag
aggttgtcttttctttatcttatcactggtaatcttgaaaagctttcaaagctgatgaag
aagaaggacgtaatgggtcagtttcagaatgctctctacttgggagatgttaaagagcgt
gtcaagatactggagaagggtggtcttttgcctctagcgtatatcactgcttcggttcat
ggcttaaaggatatcgctgagcggctttcgattgcgctaggggacgatgtgccatcattg
cctcaagggaagactcactcgcttcttatgccaccgattcccgtcgtgtgtggtggtgat
tggcctcttctgagagttatgaaaggaatattcgaaggaggacttgagagtggaaatgat
gacgttgaagaaggcgattggggtgatgcacttgacatggttgatgttgaagaagacgga
gagggttctggatggggaggacttgagcttcttgacactccctttatgacacctagtcaa
gggatggacgtaagtcagatatggagccaggaatctccccttgctgctgagcaagctgca
gcgggaagcttcgacactgcaatgagtcttctccacagacagcttggcataaagaacttt
gcgcctttgaaatcgatgcttctcgatctgttcagtggcagccatagctatcttcctgct
ttctcttcatctcctgtgcttacttcactcactgcaaacctccagccacctcacttaaga
ctcgccctgttgagtgcaatgggagtctgctacaaggcgaggaacctcgccactgcctat
aacttcgccaaaagattgttggaaaccaacccaacggaaagccaagccaagacggctaga
caaattgttcaagccgctgaacgcaacatgactgatgcaaccgagctcaactacgacttc
aggaacccgtttgtgatatgcgggtcgacttatgtccccatctatagaggacaggaaaac
gtgtcgtgtccttactgcactgctcggtttgtaccgagccaggaaggaaaaatctgtggg
atctgtgatcttgcagtcattggcgcggacgcatctggtttgctatgctctccttctcaa
gtccggtga
DBGET
integrated database retrieval system
