Brassica napus (rape): 106365993
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Entry
106365993 CDS
T04128
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106365993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106365993
03036 Chromosome and associated proteins [BR:
bna03036
]
106365993
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106365993
Coactivators
SAGA/TFTC/STAGA complex
106365993
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106365993
STAGA complex
106365993
TFTC complex
106365993
SAGA complex
106365993
SLIK complex
106365993
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
DSE1_N
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_VPS8
ASA1
Beta-prop_SCAP
Beta-prop_RIG_2nd
PAC11
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_EIPR1
CFAP251_N
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
Tricorn_2nd
Beta-prop_RIG_1st
RAB3GAP2_N
SHKBP1_KCTD3_C
LisH
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
106365993
NCBI-ProteinID:
XP_013660974
UniProt:
A0A816IPS6
LinkDB
All DBs
AA seq
668 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNSAAKQLQEALHHNNGGTFNSTDYHNDPELTKLIRSFSQSE
NDPTRYRDGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARSFFNSFR
RDHEMIHLRDLQKLEGVLVPSHLEEMEFARSLRQSKVNIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPNSSSDDIDAVTIVGSFQETADHVNQKEIQWGLLEDSLEDRLE
KTGSLLSDSEKGQGESKDGDIDDSKKRSNEIGKQGSSLKKLKKDKAGNATAKVARQETSI
VSPAPRVKPELALPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCASIS
HDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQGESDTNDQNVGPNGRRNYTLLLGHSGPV
YSATFSPPGDFVLSSSADTTIRLWSTQLNANLVCYKGHNYPVWDVQFSPFGHYFASCSHD
RTARIWSMDRVQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFI
GHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLL
ASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAA
GALAKPAS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtagacgagttcgtaatgggctacttgaagaagaagggcttcaac
agcgcagctaaacagcttcaagaagctcttcaccacaacaatggtggcaccttcaattcc
acggattaccataacgatcctgagctcaccaagctcatccgctccttctcccaatcagag
aatgatccaactcggtaccgggacggttacagcaaacttaggtcatgggcttataactcg
ttggatctatataaacatgaattgctgcgagtgatgtatccagtgtttattcattgttac
atggacctggttggtaaagggcacactcaagaagcgagatccttcttcaacagcttccgc
agagatcatgaaatgatacatttaagggatcttcagaagctggaaggcgttcttgttcct
tctcatctagaggagatggagtttgctcgttctcttagacaaagcaaggtcaacatcaag
atttgtcagtattcgtatgatctgttgcttcagtatctacataggacggaatctacttta
atgctcggtattattaacgagcacatcaatttccaagtctactcgggacagcctaattcc
tcatctgatgacatagacgctgtcaccattgttggaagttttcaggagacagctgatcac
gtcaatcaaaaagaaatacagtggggattgcttgaagactcgctggaagatcgcctcgag
aagacgggaagtctactgtctgattctgagaagggacaaggagaaagtaaagacggggac
attgatgatagtaagaaaagatccaacgaaattggaaagcaaggctcttccttaaaaaag
ttaaagaaggacaaagcaggaaatgcaacagcaaaagttgcacgtcaggagaccagcata
gtatcgccggcaccacgtgtgaaaccggaacttgccttgccagtcatgtcaacggatgta
gaggaatccatccttgaagacctgagaaaccgtgtgcagttgagtagtgttgcaatgcca
tctgtcagcttttatacatttgttaatactcataacgggttaaactgtgcatctatatct
catgatggttctctggttgctggtgggttctcagattcatcaataaaggtctgggacatg
gcgaagataggacaagctggcagtggtgctttgcaaggtgaaagtgatacaaatgatcaa
aacgttggaccaaatggcagaagaaattatacattattactgggtcactcagggccagtt
tactcggccactttcagtccacctggagattttgtattatcttcttcagcagatacaacg
atacggctgtggagcacacaactaaatgccaatcttgtgtgctacaaaggtcacaattac
cctgtgtgggatgtccagtttagcccttttgggcattactttgcaagctgttctcatgat
cgcactgcacggatttggtcaatggaccgagtacaacctctgcggataatggcagggcat
ctatctgatgttgattgtgtacagtggcatcccaattgtaactacattgcaaccggttct
agtgataagacggttagactctgggatgttcaaacaggagaatgtgtcaggatattcatt
ggacacaggagcatggttttatcattggcgatgtctccagatgggaggtatatggcctct
ggtgatgaagatggaactataatgatgtgggacctctcaacagctcgctgcatcacacct
ctcatgggccataattcatgtgtatggagtctctcttacagcggcgaggggtctcttctg
gcttctggatctgcggactgcacagtgaaactgtgggacgtcacctcaagtaccaaattg
accaaggccgaggaaaaaaatggaaactcgaacagactgcgctcgctcaggactttcccc
accaagtccacaccagttcacgctctcagattttctcggagaaatctgctgtttgctgca
ggagcgctcgctaaacccgcaagctga
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integrated database retrieval system
