Brassica napus (rape): 106366767
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Entry
106366767 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106366767
09122 Translation
03013 Nucleocytoplasmic transport
106366767
03015 mRNA surveillance pathway
106366767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106366767
03041 Spliceosome [BR:
bna03041
]
106366767
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106366767
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106366767
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106366767
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106366767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
106366767
NCBI-ProteinID:
XP_013661881
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All DBs
Position
C3:complement(2477572..2481329)
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AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVLDSGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKELLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AGELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQDRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagggacaacgaagcctatgaggaggagctccttgattatgaggaagag
gacgagaaggttctcgattctgggaataaagttaacggcgacgctgtgaagaaaggttac
gttgggatacacagttcaggattcagagacttccttttgaaaccggagcttctccgagct
attgttgactctggatttgagcatccatctgaagtgcaacatgagtgtatccctcaagct
atcttgggcatggatgttatctgccaagctaagtctggtatggggaagactgctgtgttt
gtgctttcgactctgcaacagatcgagccgactcctggccaggtgtctgcacttatccta
tgccatacaagagagttagcataccagatctgcaatgagtttgtgcgattcagtacctac
ctgcctgatacaaaggtttcagtgttctatggaggagtcaacaacaaaattcacaaagaa
ctgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgagttcttggactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgagtgtgat
aaaatgctcgagtcactagacatgcggagggatgtgcaggagattttcaagatgactccc
cacgacaaacaagttatgatgttctcagcaacgctcagcaaagagatacgccctgtctgc
aagaaatttatgcaagatccaatggagatttatgttgatgatgaagccaaattgactctt
catggacttgtccagcactacatcaaactgagcgagatggagaaaaaccgcaagttgaat
gatcttcttgacgcattggacttcaatcaagttgtcatatttgtgaagagcgttagcaga
gctggggagctgaacaagttgcttatcgagtgcaatttcccctcaatatgcattcactcc
ggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaagggcacaagaga
attctggtggcgacagacttggtagggagaggaattgacattgagcgtgtcaacattgtc
atcaactacgacatgccagattctgctgatacatatcttcacagggttggtagagctgga
aggtttggaacaaagggtcttgcaataacattcgtggcatcagcttctgattcggaagtt
ctcaaccaggtacaagataggtttgaggttgatataaaggaacttcctgagcagattgat
acgtcgacttacatgccgtcctaa
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