Brassica napus (rape): 106366877
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Entry
106366877 CDS
T04128
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106366877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106366877
03019 Messenger RNA biogenesis [BR:
bna03019
]
106366877
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106366877
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106366877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
106366877
NCBI-ProteinID:
XP_013662003
LinkDB
All DBs
Position
A9:complement(17019735..17023668)
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AA seq
775 aa
AA seq
DB search
MQSEKILNPSLLLSTTTGRKSMSVVKPPPPPPSILDRFKALLNQREDEFGGEDPSSEEVV
QLYEVVLGELTFNSKPIITDLTIIADEQREHGEGIANAICTRILEAPVEQKLPSLYLLDS
IVKNIGRDYARYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSGVFPSPVLRKIEMQLK
LTSATNSQSSLGASEPTQPTRGIHVNPKYLRRLDPSAAESNLRGISSSAKVYSQNSVGGY
DDFEDQLDSPSSLAGPRSSTAGSLTLASSAIGADGFPRRFSDGVNSSNQAYNYGMGRATG
RDDEHMDWRRKDNFGQGNDHERPRALIDAYGVDTSKHTSISRPIRNVNGIHSKMVTPWQN
TEEEEFDWEDMSPTLERSRAGEFLRSSVPALGSVRPRPRLGNIHDFQLDSDIKNGMNSRF
GRGPAMISRVGPSGADALPDGTWPHLGVRGSNSLPVPSAHVHHLANPGNAMLNHLNGKPL
YRPENQVSHMTQQNQVLGNYLPSSSAMAPRAMQSLLPHGHGYPPLGSTIRPSLSVHGGEA
MHPHSSGVSISQNPSLGASNQPPGGAFSGLIGSLMAQGLISLNNQPTGQGASVMEFDADM
LKIRNESAITALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQKPSRKWFV
SGSMWLSGAEALGAEAVPGFLPVEPTTEKKDDEEMAVPADEDQTSCALCGEPFEDFYSDE
TEEWMYKGAVYMNAPDGSTTDVDKSLLGPIVHAKCRPETNGGDIEEGSQRKRMRS
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcggagaaaatcctcaacccaagccttcttctcagcaccaccactggccgcaaa
tcgatgtccgtcgttaaaccgccgccgccgccgccgtcgatactcgaccggttcaaggct
ctgctcaatcagcgcgaggacgagttcggcggcgaggatccgagttcggaagaggttgtt
cagctctacgaggttgttctgggcgagctcactttcaattccaagcctatcatcactgat
ctcactatcatcgccgatgagcagcgggagcacggcgaagggatcgctaatgctatctgc
actcgaatcctcgaggcaccggttgagcaaaagctgccgtctttgtatcttttagacagt
attgtcaagaacattgggagggactatgctcgttacttctcgtctcgtttaccagaggtc
ttttgtctagcgtacaggcaagcgcacccgagtttacatccttcaatgcgccacctgttt
gggacttggtctggtgttttcccatcacctgtattacgcaagattgagatgcagttgaag
cttacttccgcaacgaacagccaatcttccttaggggcttctgagccgactcaaccaaca
aggggcatacatgttaatccgaaatatcttcgtaggctggacccctctgccgctgagagt
aacttgagaggaataagttccagtgcaaaagtgtatagtcaaaactcagtcggcgggtat
gatgattttgaagatcagttagatagcccatcttctctggccggaccaaggtctagtaca
gctggaagtttgaccctcgcatcttctgcaattggagcagatgggtttcctaggaggttt
agtgatggagttaattcttctaatcaagcctataactatggaatgggtcgggctactggc
agagatgatgaacacatggactggcgaagaaaggacaacttcggccaaggaaatgaccat
gaaagacccagagctttgatagatgcatatggagttgacaccagcaaacacacatccatc
agtagaccaatccgcaacgtgaatggtatccacagtaagatggttacaccatggcagaac
accgaggaagaagagtttgattgggaagatatgagccctacactagagcgtagtagggct
ggtgaatttttgcgatcatctgttccagcattaggaagtgtaaggccaagacctagacta
ggaaacatacatgattttcagttagattctgacattaagaacggtatgaactctcgtttt
ggtcgaggacctgcgatgatatcaagagttgggccttctggtgctgatgctcttcctgat
gggacatggccccatttgggtgttagaggatccaactctctccctgtaccttctgctcac
gtgcatcatttggcaaatcctggtaatgcgatgttaaatcacttgaatggtaagccttta
tataggccagaaaaccaggtctcccacatgacccaacagaatcaagtgctaggaaattac
ttaccgtcttcatctgcaatggcaccaagggcaatgcaatcgctgttaccccacggtcat
ggttaccctccactagggtcaaccattagaccatctttatcagtccatggtggggaagcc
atgcatcctcattcttcaggggtttccatctctcagaatccttcgttgggagcctctaat
caaccaccgggcggtgcattctctggtctgattggctctctcatggctcaaggtttgatc
tcgttgaacaatcagcctactggccagggggcttcggtgatggagtttgatgcggacatg
ctcaagatacgtaacgagtctgcaataactgctctatatggggatcttcccaggcaatgc
acaacatgtggtctacgctttaagtgccaagaagagcacagtaagcacatggattggcat
gtaaccaagaacagaatgtccaagaaccataagcaaaagccttctcggaaatggtttgtg
agtggtagcatgtggcttagtggcgcagaggcacttggagctgaagcagtgccggggttc
ttacctgtcgagccaacaacagaaaagaaggatgacgaagagatggcagttcctgcagat
gaagaccaaacttcatgcgcattatgtggtgagccgtttgaagacttctatagtgatgag
acggaggaatggatgtacaaaggtgctgtgtacatgaatgctcctgacggatcaacaaca
gatgtggacaagtctttgttaggtcctattgtacatgctaagtgtaggccagagactaat
gggggtgatatcgaagagggtagtcaaagaaaaagaatgcggagttag
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