Brassica napus (rape): 106367313
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Entry
106367313 CDS
T04128
Name
(RefSeq) uncharacterized protein BNAA09G27860D isoform X1
KO
K06100
symplekin
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106367313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106367313
03019 Messenger RNA biogenesis [BR:
bna03019
]
106367313
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106367313
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106367313
U7-dependent histone pre-mRNA processing factors
106367313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
106367313
NCBI-ProteinID:
XP_013662508
UniProt:
A0A078GQJ4
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All DBs
Position
A9:complement(29242053..29252691)
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AA seq
1302 aa
AA seq
DB search
MATAAATARAQALSLLAAANNHGDLAVKLSSLRQVKEMLLSLEPSLSAEIFPYLAELHSS
PETLVRKSLIEIIEEVGLRMLDHSDVLLTVLLVLAKDEDPLVAKKAISVGTAFYCTILEE
MAMQFHHHGKVDRWVGELWKWMVKFKDSVFSTALEPGCVGVKVLALKFMETFILLFTPDA
SDPENIFNEGSRQMFNISWLVGGHPILNSAMLMSEASRTFGILLDLIQAAGRLPGALTIT
VVSCLAVVARKRPVHYNSVLSVLLDFHPNLESVKGCHAASVQYSIRTALLGFLRCTSSPM
IESRDKLLRALRAMNAADVADQVLRQVDKLIRNNERAAREKWSGKNNQAVNHQNSWDLSK
KRIMPQGEDDTVNGEVAPKRLRHNNNMHLTPQGQISDSPHGTVSINGIASGNHPSDSEPT
PVEQMVSMIGALLAEGDRGAASLEILISKLHPDMLADIVITSMKHLPSSPPTSTTSLATP
ADIVVSSSINPMRSPTRQPQLPFDSTLPVGSSLSDVPSLNAGVDPRRDPRRDPRRMDPRR
SNPSVGPTSLPVGEGKETVPVQIDISTLASKPLSVPAAGASGSVHPITVEDSQNKVMGSS
VIRRIDQPDCREELLPIPKEYSYLSKGKSSLDVPLSPCRDDEGIRKTKFDLDPVSVPDFN
QHSPSEAGPDFDLHPPVDSNITAAEESYRELAPVPSHVELTKEQSNTVGKLALERIIESN
RHVCGFDCNKIRMALIARLIAQIDAGNDVAAILKEHISVDHREFKGHELVLHVLYHLHSR
ANLDTDESSSYASVYENFLIAVARSFLDTLPPFDKSFSRLFGEAPHLPDSAIKLLNELCS
TRPDPVGGEACDSERVTQGLGVVWSLILVRPNERKACLAIALNCSVHYEEDIRAKAIRLV
TNKLYHLRYISEHVEQFATDRLLTAVNSETDFSQTAEGTKIEAKSQITSTSDSPRSGNSE
IHSQQDLQTSRDVSVLSFSDAQRLISLFFALCKKKPSLLRLVFEVYGKAPKTVIQAFHRH
MPILIRELGSSYIELLPIISDPPKGSENLLTLVLQILTQELAPSLDLIATVKHLYETKLK
DVSILIPLLSSLTKDEVLPIFPPLLNLPPDKFQLALAHILQGSAHTGPALTPAEVLIAIH
EVVPDKDGPTLKKITDACSACFEQRTVFTQQVLAKALGQMVDRTPLPLLFMRTVIQAIDA
FPTLVDFVMGILSKLVSREIWRLPKLWPGFLKCVSQTQPHSFPVLLELPMPQLESIMKKF
PDLRPPLTAYANQPTIRASLPNSAFSVLGLDNGQDSRSQMHP
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgccgcggcgacagccagggcgcaggcgctctctctcctcgccgctgccaac
aaccacggcgatttagcggtgaagctctcgtctctaaggcaggtgaaggagatgttgctg
tccctggagccgtctctctccgctgagattttcccctatctcgcggaactccactcgtcg
cctgaaactctagtccgcaaatcccttatcgagatcattgaagaggttggtttgaggatg
cttgatcattctgatgttcttctgactgtcttactagtcttagcgaaggacgaggatccc
cttgttgcaaagaaagctatttctgttggaacagctttctattgcaccatcttggaagag
atggcaatgcagtttcatcatcatggtaaagttgatcgttgggttggggaactatggaaa
tggatggttaagttcaaagactctgtcttttctactgctttggagcctggttgtgtaggg
gtgaaagttttggcgctaaagtttatggagacatttattttgctttttactcctgatgca
tctgatcctgagaatattttcaacgaaggaagtagacagatgtttaacatttcctggcta
gttggcggtcaccccattctaaattcagcaatgctcatgtctgaagcaagtaggacattt
ggcatcttactagatctcatacaagcggctggtcgtttacccggtgcactgacgataact
gttgttagttgtcttgcggtggtagcaaggaagaggcctgtccactacaacagtgtcctt
tccgtcctactggattttcacccaaatcttgagtcggtaaaggggtgccatgctgcaagc
gttcagtattctataagaactgccttactgggattccttagatgtacttcctcacctatg
atagagtcaagagacaagcttcttagagcattacgagcaatgaatgctgcagacgtcgct
gatcaagttctccgccaagtggataaattgatcagaaataatgagcgcgctgcacgtgaa
aaatggtctggcaagaacaaccaggcggtaaatcatcagaattcttgggatttgtcaaag
aaacgaataatgccccagggtgaagatgatacagtcaatggtgaggttgctccgaagcgc
ttacgccataataataacatgcatttgactccgcaaggtcaaataagtgattctccacat
ggaactgtctctatcaatggcatagcttctggtaaccatccttcagacagtgagccgact
ccagtggaacaaatggtttcaatgattggtgctttgcttgctgaaggagacagaggagct
gcatcacttgaaattctcatttctaagcttcatccagatatgcttgctgatattgttatt
acaagcatgaagcatttgcctagtagccctcctacgtcgacaacttcactggctactcca
gcagatattgtcgtttcttcttccataaatcccatgcgttctccgactcgtcagccacaa
cttcctttcgattcaacccttcctgttgggtcatcattatccgatgtgcctagcttgaac
gcgggtgtcgaccctagacgcgacccaagaagggaccctcgtcgcatggatccaagacgt
tcaaatccatctgtgggaccaacatcactacctgtaggtgagggtaaagaaacagtccca
gttcagatagacatctcgaccttagcgagcaagccactttcggttcctgctgcaggggct
agtggttcagtacatccaataacagtagaggatagccaaaacaaggtgatgggaagttcg
gtaatcagaagaatcgatcagcctgattgcagagaggaattgttgcctattcccaaggag
tatagttacctctcaaagggcaaatcatctttagatgttccactatctccttgcagggat
gatgaaggcatcagaaaaacaaagtttgatttggatccagtgtccgttccagattttaat
caacactcgccttcagaagcaggaccggattttgatctacaccctcctgtagactcaaat
attactgcagcagaggaaagctaccgagagttggcacctgttccatcacatgttgaactt
accaaagagcaaagcaacactgtaggaaagttggctttagaaaggataattgaatcaaat
agacatgtctgtggctttgattgtaacaagattcgcatggcattgattgcccgattgatt
gctcagattgatgctggcaatgatgttgcagccatactaaaagagcatattagtgtggat
catcgagaattcaaggggcatgaacttgttttacatgttctgtaccatctgcattcaagg
gcgaatctggacactgatgaatcctcttcctatgctagtgtttacgaaaattttctcata
gcagtggcaagatcatttctggatactcttcctcctttcgacaagtcttttagcagactt
tttggagaagctccacatctacctgattctgccataaagctactgaatgaactctgctcc
actcgtcctgacccagttggaggagaagcctgtgatagtgaacgtgttacccaagggctt
ggtgtagtttggagcttaattctagtgcgtccaaatgagcgaaaagcatgcttagctata
gcattgaattgttcagttcattatgaagaagacatccgtgcaaaggccatccgacttgtc
acgaacaaactatatcaccttagatacatatcagagcatgttgagcaatttgcaacagat
aggctgctgactgctgtgaactctgagacagatttctcgcagactgcagaaggaacaaaa
atagaggctaaaagtcagataacttcgacaagtgactctccaaggtctggaaactccgaa
attcactctcagcaggatctacaaacttctcgtgatgtttctgttttatcattttctgat
gctcagagactaatttctctgttcttcgctttatgtaaaaagaaacctagtctccttcga
cttgtctttgaagtttacgggaaagctccaaaaacagtaattcaggcttttcatcgacat
atgcctatcctgatacgagaattaggttcatcttatattgaactgctccctataatatct
gatcctcctaagggaagtgaaaatttattgacattggtgttgcaaatattgacacaagaa
ttggcaccttcgttggatttgattgctactgtaaagcatttatatgaaacgaagctaaag
gatgtttcaattcttatcccattgctttcttcactcactaaagacgaggttttgcctatc
tttccgccgcttcttaatcttccacctgataagttccaacttgcacttgctcatatatta
cagggttctgctcacactggccctgcgctaacacctgccgaggtactgattgctattcac
gaggttgttcctgataaagatgggccaacactgaaaaagataacagatgcatgttcagct
tgctttgaacaacgcacagttttcacgcagcaagtcttagcaaaggccctcggtcagatg
gttgatcgaacacctctgcctttacttttcatgagaacagtaattcaggcaatcgatgct
tttccaacactggttgactttgtcatgggaatcctttcaaagttggtgagtagggagata
tggagactaccaaaactgtggcctggcttcttgaaatgtgtgtctcagacacagccacat
tctttccctgtcttgttggagttaccaatgccgcaacttgaaagtatcatgaagaagttt
cccgatctaagaccacctcttactgcttatgcgaatcagccaactatcagagcttctcta
ccaaattcagccttttcagttcttgggcttgacaatgggcaagattcgcggtcacaaatg
cacccttag
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