Brassica napus (rape): 106367476
Help
Entry
106367476 CDS
T04128
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
bna04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106367476
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106367476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106367476
04121 Ubiquitin system [BR:
bna04121
]
106367476
03400 DNA repair and recombination proteins [BR:
bna03400
]
106367476
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106367476
Spliceosome [BR:
bna03041
]
Complex B
Other components
Prp19 complex
106367476
Complex C
Prp19-CDC5 complex
106367476
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
U-box type E3
106367476
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
106367476
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
DSE1_N
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_NOL10_N
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
CFAP251_N
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_VPS8
ASA1
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_Aladin
eIF2A
NBCH_WD40
U-box
Beta-prop_DCAF4
zf-Nse
WD40_like
PAS_11
B-prop_COPA_B_2nd
PUMA_CC
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
106367476
NCBI-ProteinID:
XP_013662713
UniProt:
A0A078FRN4
LinkDB
All DBs
AA seq
525 aa
AA seq
DB search
MNCAISGEVPEVPVVSTKSGLLFERRLIETHISDYGKCPVTGEPLTIDDIVPIKTGKVLK
PKLLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANAPLSNGKRAAGDEETGPDAKKLCPGISADIITEL
TDCNAALSQKRKKRQIPETLASIDALGRFTQLSSHPLHKTNKPGICSMDILYSKDVIATG
GVDATAVIFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRVWRDSGDGQYA
CGHTLNDHSEEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAKVADDSEKVDYTAAA
FHPDGLILGTGTSQSVVKIWDVKSQANVARFDGHTGEVTSISFSENGYFLATAAEDGVKL
WDLRKLRNFRSFSSADANSVEFDPSGSYLGIAASDIRLYQTASVKAEWNLIKTLPDLSGT
GKATCVKFGPDAQYVAVGSMDRNLRIFGLPGDEKANADDDSAQDS
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtgcaatttctggagaagttccggaggtgcctgtggtgtcgaccaagtcaggt
ttgctcttcgagaggcgattaatcgagacccatatatcggattatgggaagtgcccagtt
actggggagcctcttaccattgatgacattgttcccatcaagactgggaaggtcttaaaa
ccgaaactattgcatacagctagtatccctggattgcttggaacgttccagaatgaatgg
gacggtttgatgctatcaaattttgcattggagcaacaactccatactgcaaggcaagag
ctaagtcatgctttgtatcagcatgattctgcttgtcgcgtgattgctagacttaaaaaa
gaaagagatgaagcacgccaattacttgcagaggttgaacgacatatacctgctgcccca
gaagctgtgacagctaatgctcctctgagtaatggtaaacgagctgccggtgatgaagaa
acgggtcctgatgcgaagaagttgtgtcctggcatttctgctgacatcatcacggaattg
acagattgcaatgctgctctctcccagaagcgcaaaaagcgacagattcctgaaacattg
gcttcaatagatgctttggggaggttcactcagctatcaagccacccacttcacaagacc
aacaaacctggcatttgttcaatggacatcttatattctaaggatgtcattgctactgga
ggagttgatgcaactgctgttatatttgatcgcccttcagggcaaatcttgtcgacactg
actggtcactcgaaaaaggttacaagtgtaaaatttgtaggtgacagtgatcttgttttg
actgcttcggctgacaagacagtccgtgtgtggcgggactctggggatgggcagtatgct
tgtgggcatacgctgaatgatcattctgaagaggtgcgtgctgtaactgtgcatgccaca
aataaatactttgtgtcggcgtctcttgacagtacatggtgcttctacgatctttcttct
ggcttatgccttgcaaaggtagcagatgattctgagaaagtggattacacggctgctgct
tttcatcccgatggtctcattctcggaaccggtacttctcaatctgttgtcaagatttgg
gatgtcaaaagtcaggcaaatgttgcgaggtttgatggacacacgggtgaagttacctct
atatctttctccgagaatggttacttcctcgcgactgctgccgaggatggtgttaaattg
tgggacctgcgcaagttaaggaacttcaggtcattctcatctgcagatgcaaactctgtg
gaatttgatcctagcggatcttatcttggtattgctgcatcagatatcagactataccag
acggcgagtgtgaaagctgaatggaaccttatcaagacacttccagacctttctggcact
ggtaaagctacatgtgtgaagtttggtccagatgcacaatacgttgcagttggctcaatg
gaccgtaacctacggatatttggtctccctggtgacgaaaaagccaacgcggatgatgac
tctgcacaagactcgtga
DBGET
integrated database retrieval system
