Brassica napus (rape): 106367761
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Entry
106367761 CDS
T04128
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106367761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106367761
03041 Spliceosome [BR:
bna03041
]
106367761
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106367761
Spliceosome [BR:
bna03041
]
Complex B
Other components
Prp19-related factors
106367761
Complex C
106367761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Mad3_BUB1_I
TPR_15
NRDE-2
Motif
Other DBs
NCBI-GeneID:
106367761
NCBI-ProteinID:
XP_048601698
LinkDB
All DBs
Position
A2:complement(26867774..26871357)
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AA seq
913 aa
AA seq
DB search
MAISQDLYPSQEDLVYEEEILRNPFSLKLWWRYLISKSDSPFKKRFVIYERALKALPGSY
KLWHAYLRERLEIVRNLPVTHPHYDSLNNTFERGLVTMHKMPRIWVMYLQTLTSQRLVTR
TRRTFDRALCALPVTQHERIWEPYLVFVGQEGVPIETSLRVYRRYLMYDPSHIEEFIEFL
LKSARWQEAAERLAFVLNDDQFYSIKGKTKHKLWMELCELLVRHANEISGLNVDAIIRGG
IRKFTDEVGMLWTSLADYYIRKNLLEKARDVYEEGMMKVVTVRDFSVIFDVYSRFEESTV
AKKMEMMSSSDEEEDEDVEEEEEEDVRLNFSLSVKELQRKILNGFWLNDDNDVDLRLARL
EELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGDAAKQILTYTEAVRTVDPMKALGKP
HTLWVAFAKLYEDHKDLVNTRVILDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALE
LMRRATAVPTVEVKRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEKIL
DLRIATPQIILNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYGKA
KLERARELFEHAVSMAPSDSVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQRLEM
YEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRSRAVYKY
ASQYADPRSDPEFWNKWHEFEVLHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQKDK
IDVEEAKDELKKAGLPDDEMAALERQLMAAPMSTTVTSKDGGRRVGFVSAGVISQSGENA
GKPVTGNGEDIELPDEDESDGDDNVEIAQKEVPAAVFGGLARKREEDGKEAEEDGAGKTL
GALERIKRQKLAQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggctatctcccaagatctctacccttcccaagaagacctcgtctacgaggaagagatc
ctccgaaaccccttcagcctcaagctctggtggcgctacctcatctccaaatccgactcc
cccttcaagaaacgcttcgtcatctacgagagagccctcaaggccctccccggaagctac
aagctctggcacgcttacctccgcgagaggctcgagatcgttcgtaacctccccgtcact
caccctcactacgactccctcaacaacaccttcgagagaggcctcgtgactatgcacaag
atgcctaggatctgggttatgtacctccagacgcttacctcccagaggcttgtcactagg
acgaggaggacgtttgatcgtgcgctctgtgcgttgcctgtgactcagcacgagaggatc
tgggagccgtatcttgtctttgtggggcaggagggtgtccccattgagacctcgcttaga
gtttatcgtaggtacttgatgtatgatccttctcatattgaggagtttattgagtttctg
ttgaagtctgctcgttggcaagaggctgcggagaggttggcttttgttttgaatgatgat
cagttttactctattaaagggaagactaagcataagctgtggatggagctttgcgagctt
cttgtgcgtcatgctaatgagatctcgggtttgaatgtggatgctattataagaggaggg
attaggaagtttactgacgaggttgggatgctgtggacgtctcttgcggattattacatt
aggaagaacttgcttgagaaggctagggatgtttatgaggaggggatgatgaaggttgtg
actgtgagggactttagtgttatattcgatgtgtattcgaggtttgaggagagtacggtt
gctaagaagatggagatgatgagttcgagtgatgaggaagaagatgaggatgtggaggag
gaggaagaggaggatgtgcggcttaacttttctttatccgtgaaggagctgcagaggaag
attctgaatgggttttggctgaacgatgataacgatgttgatctgaggttggctcgcttg
gaggagctgatgaacagaagacctgcgttagctaatagtgtcctccttaggcagaaccca
cacaacgttgagcagtggcatcggagggttaaaatcttcgagggagacgcagcgaagcag
attctcacttacacagaagcagtgaggactgtggatcctatgaaggcccttgggaagcct
cacaccttgtgggttgcgtttgctaaattgtatgaagaccacaaagacttggtcaacact
agagtgattcttgacaaggcggttcaagtgaactacaagacagtagaccatctcgccagc
gtctggtgcgaatgggctgaaatggagctgaggcacaagaatttcaaaggagcgttggag
ctgatgaggcgcgctacggctgtgccaacggtagaagtcaaaaggagagtggctgctgat
gggaacgagccggttcagatgaagctgcacaggtccttgaggctttggtccttttacgtt
gatttggaggagagtcttggaacgctggagtcgacgagagctgtctatgagaagatattg
gatttgaggatagctacgccgcagatcattctgaactatgcttaccttctcgaggagaat
aagtactttgaagatgctttcaaggtgtatgagagaggtgtgaagatattcaagtatcct
catgtgaaagacatatgggttacttatcttacaaagttcgtcaagagatatgggaaggca
aagctggagcgggccagagagttgtttgagcatgctgtttcaatggctccatcagattct
gtaaggaccttataccttcagtacgccaagctagaagaggattacggtctagccaagcga
gccatgaaagtgtacgaagaagccaccaagaaggttccagaaggccagaggctggagatg
tacgagatatacatttcccgtgcagcggagatcttcggtgtcccaagaacgagagagata
tatgagcaagcgatagagtctggtcttccacacaaggatgtgaagatcatgtgcataaag
ttcgcagagctggagagaagcttgggagagattgatcggtctcgtgctgtctacaagtat
gcctctcagtatgctgatccaagatccgacccggagttctggaacaagtggcacgagttt
gaggtgttacatgggaatgaagacacgtatagagagatgcttaggatcaagagaagcgtc
tccgcaagttacagtcagactcatttcattctgccggagaacatgatgcaaaaggacaag
atagacgtggaggaggctaaagacgagctgaagaaagcgggtttgccagatgatgaaatg
gcggctctggagaggcagcttatggcggctccaatgtctaccacggttacatctaaggat
ggtgggaggagagtcgggtttgtgagcgcaggagtcatctcgcagtctggtgagaatgct
gggaagcctgtgacagggaatggagaagatattgagcttccggatgaagatgagtccgat
ggagatgacaatgtagagatcgctcagaaagaggtccctgctgctgtgtttggaggactt
gctagaaagagagaggaagatgggaaagaagctgaggaagacggtgcagggaagactctg
ggtgcgttggagaggataaagagacagaagctagctcagtga
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