Brassica napus (rape): 106367786
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Entry
106367786 CDS
T04128
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106367786
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106367786
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106367786
NCBI-ProteinID:
XP_013663091
UniProt:
A0A816UHZ2
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Position
C8:36251280..36254873
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AA seq
476 aa
AA seq
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MMLQRSCIVLFSLSLFVPHMGFAMLNKTLLLIPHPDPELVAHDVHWRVNASIWRRQAMDT
TDQAGSNQCFTGNPIDDCWKCDTNWPNNRQRLADCGIGFGQYALGGKGGRFYFVTDSSDD
DVVDPKPGTLRYGVIQVEPLWIVFPSNMMIKLKHELIFNSYKTLDGRGANVHIVGGGCIT
LQYVSNIIIHNIHIHHCHPSGNTNIRSSPTHYGLRTESDGDGISIFGSKDIWIDHCSLSR
CKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGDKLVQRM
PRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDW
KGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVDPKSAAFIDQITFHCGVLGVGGRNN
NLGMWTTTGSEGSGGLDSYNDYNDEMSGTCSTNRLSLSVIVIAFMFNLMSYLFMLL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttcaaagaagctgcattgtacttttctcactttctctgtttgttccacacatg
ggtttcgccatgctcaacaaaactctccttctcataccacatcccgacccagagctagtc
gctcatgatgttcattggagggttaatgcctctatatggagacgtcaagctatggatacg
acggaccaggccggttcaaaccagtgcttcacgggtaacccaatcgatgactgttggaaa
tgtgacacaaactggcctaataaccgacaaaggctagccgattgtggaatcggtttcgga
cagtatgccttgggaggcaaaggcggccggttttacttcgtcactgattcctccgacgat
gatgtcgtcgaccctaaaccgggcactctcagatatggagtgatacaagtagagccactg
tggatagtgttcccaagcaacatgatgataaaattaaagcatgagctaatattcaacagt
tacaagactcttgatggaagaggagctaatgttcatattgttggtggtggttgcatcacc
cttcaatatgtctccaatatcatcattcacaacattcatatccaccattgtcacccatcc
gggaatactaacatacggtcaagtccaacgcactacggattaagaacggaatcggacggt
gatggtatctccatctttggatcaaaggacatatggatcgaccattgttctctatcaaga
tgtaaagatggtttgatagatgctgtgatgggatccacagggattacaatatcgaacaac
ttcttctcacaccacaatgaagtcatgcttcttggtcacagcgatcactacgagccagac
agtggcatgcaggtaaccattgcatttaatcacttcggagataaattggtacaaaggatg
cctaggtgtagacgtggatacatccatgtggttaacaatgattttactcaatgggaaatg
tatgcgattggcggtagcggtaacccaactattaatagtcagggtaaccgctatacggcc
ccaaccaacccgtttgcgaaagaggtgactaaaagagtagaaacgcctgatggcgattgg
aaagggtggaactggagatcggagggagacatcttggttaatggagcgttcttcgtggca
tctggagaaggtgctgagatgaggtacgagaaggcgtatagcgtcgaccctaaatctgcc
gcgttcatcgaccaaatcacatttcattgcggcgttcttggcgttggtggcaggaataac
aatttggggatgtggactactactggatccgaaggtagtggcggtttagattcttataat
gactacaacgatgaaatgtctggcacctgttcaaccaaccggttatctttgtcggttatt
gttatagctttcatgttcaatttgatgtcatatttgttcatgttgttgtaa
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