Brassica napus (rape): 106367879
Help
Entry
106367879 CDS
T04128
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106367879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106367879
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106367879
mRNA cycle factors
Common to processing body (P body) and stress granule
106367879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
106367879
NCBI-ProteinID:
XP_013663195
UniProt:
A0A816J8V9
LinkDB
All DBs
Position
C9:complement(54676445..54681486)
Genome browser
AA seq
1030 aa
AA seq
DB search
MMTLQMDKNTASSPRERAKSIFDKTVELEIKRRKAAQARNPSDPNLWQQIRENYEAIVLE
DHTFSEEHNIEFTLWQLHYKRIEDFRSHINAVLASSNSNAQNSKGPSMADRVANLKLQFR
TFLSEATGFYHEMILKIRSKYGLPLGYFSESQDSQNLADKDGKKFAEVQKGLVSCHRCLI
YLGDLARYKGLYGEGDSKNREHAAASSYYLQAASLLPGCGNPHHQLAIIASYSGDEFAAT
YRYFRSLAVETPFPTARDNLIVAFEKNRLSYAQLFAAPKDSPRRPTGKRRGKGQDISSKK
DADVVAVPEKDKATSADEKLKAFCVRFVRLNGILFTRTSLETFPDVLASTSSSFRDLISS
SLKEEMSFGKDTSDSALFIVRLVTILIFSVDNSKKEKEGQSYAEIVNRVELARNSLTASF
ELLGHLIEKCAQLCDLSSSYFLPGVLVFVEWLACCPDIAQGSDSDERRTAVRNSFWNQCV
TFFNQILSLGPMYIDDVEDETCFSNMSMYDERETENRLALWEDYELRGFLPLLPAQSILD
FSRRHSFATEGPKEKKARIKRILAAGKALTSVIKVDQNHVYFDSKKKKFLVGSEPSDDLL
DSHSSPAEADNAFQDNQGMVNHITPVTQRYQQIHLVEEDDDEEIVFKPLVTEKRKGASDQ
IHVPNGGFKNPDQVATVGDFKALSVSDAAFHENLLLQARGNASIQLPASVGSNLLAHLLP
STQSQGVQLQQVQTQAVHPQPAQSLASARLQPMQSPVAQQSQAALLQQLHSRAMHFQHPQ
GQVPHVSLAQSHSASLGGSKWLPEEAASSLSNFAQMGNGHVMSEMQGNHGVSYYPAHSLP
IHQSFNVNGMAGMPYSQSRTPEAMLPPTIDTVSSSGIFCNGLGVQSSLARKSPIGRASKH
LGPPPGFNSVPSKLQKEPAPGPDMSGRTLPADDYSWLDGYQGQSHQGTAFNSSLNYGSSG
KPEHVGTSNGLNGPANFPFPGKQAPASQVKAKFPYFQHPKEDNFVNGNDQFTQLPQQYPG
HPSWSGHRFV
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgatgactttgcagatggataagaatactgcttcctccccaagggagcgagccaagtcc
atattcgataagactgttgagttagaaatcaagcgtaggaaggctgctcaggctcggaat
ccttctgacccgaatctgtggcagcaaattcgtgagaattatgaagcaatcgttcttgaa
gatcacacattttctgaggagcacaacattgagtttactctgtggcagctgcattacaaa
cggattgaagactttagatcacacatcaatgctgtcctggcttctagtaactcgaatgct
caaaattcaaagggtccatctatggctgaccgggtcgcaaacctcaagctccagttcaga
actttcctttcagaagcaactgggttttaccatgaaatgatcttaaaaattagatcaaag
tatggtcttcccttgggttatttttcggagagtcaagatagtcaaaatttggctgataag
gatggaaagaagtttgcagaagttcaaaaaggcttggtatcttgtcaccgttgcttaata
taccttggtgatcttgctcggtataaaggattgtatggagagggggattccaagaaccga
gagcatgctgctgcctcgagttactatttgcaagcagcttctctattgccaggctgtgga
aacccacatcatcagcttgctataattgcttcctattccggggatgagtttgcagcaaca
tatcgttatttccggagtttggctgtggagactcctttcccaactgcccgtgacaacttg
attgttgcttttgaaaagaatcgtctgagttatgcccaattgtttgcggctcccaaagac
tcacctagaaggcccactggtaaacgaagaggtaaaggccaagatatttcatcgaagaaa
gatgcggacgtggtagctgttcctgagaaggataaagcaactagtgcagatgagaagctc
aaagcattctgcgttagatttgttcgtctaaacgggattctttttaccagaacaagcctc
gagacattcccagatgttcttgcttccactagcagcagttttcgagatctgatttcttcg
agcttaaaggaagagatgagttttggtaaagacaccagtgacagcgcactttttatcgtc
aggctcgtaacaattcttatatttagcgtcgataactcgaagaaagaaaaggaaggtcag
tcatatgcagaaattgtgaatcgtgtggagcttgctagaaactccttaacagcaagtttt
gagttacttgggcacctaatagagaagtgtgcgcaactgtgtgatctttcgtcaagttac
ttcttgcctggtgtcttagtttttgttgaatggttggcctgttgtcctgatattgcacaa
gggagtgattcggatgaaagacggactgctgtgagaaacagcttttggaaccagtgtgtt
accttcttcaatcaaatcttgtctcttgggcctatgtatattgatgatgtcgaagatgag
acttgcttctcaaacatgagcatgtatgatgaaagagaaactgaaaacagacttgcactg
tgggaggactatgagttaagaggattcttgccattgcttccagctcagtctattctcgac
ttttcaagaagacattcctttgcaactgaaggtcccaaggaaaagaaagctcgtataaag
aggatcctagcagccgggaaagcattgaccagtgtgatcaaggttgatcagaatcatgtg
tattttgattcaaagaagaagaaatttcttgtcggttctgaaccgtcagatgacttgctg
gattctcattcaagcccagcggaagctgataatgcgtttcaagataaccaaggaatggtg
aatcatattacgccagtgacgcagcgatatcagcagattcatttggttgaggaggatgat
gatgaagaaattgttttcaaacctctagttactgagaagaggaaaggggcttctgaccaa
atacatgttcctaatggaggcttcaagaatcctgatcaagttgcaactgtgggggacttc
aaagctttgagtgtttcagatgcagcttttcatgaaaatctccttctccaggcaagaggc
aacgcaagtattcaactgcctgcatctgttggttctaaccttctggcacaccttctgccg
tcaacacagtcccagggtgtgcagttgcaacaggttcagacacaggcagtgcatcctcag
ccagctcaatcgctagcctctgcacgacttcaaccaatgcaatcaccggtggcacaacaa
tcgcaggccgcactacttcaacaactgcattcacgggctatgcactttcaacatcctcaa
ggacaggttccacatgtttcactggcccagtcacattctgcttcccttggtggtagcaag
tggctaccagaagaagctgctagtagcctatctaattttgctcagatgggtaacggtcat
gtgatgagtgagatgcaaggaaatcatggagtctcctattaccctgcacactcattgccg
atccaccagtctttcaatgtcaatggtatggctggtatgccgtattcccagtcacgaaca
cctgaagctatgttgccacccacaattgatactgtttcatcttctggaattttttgtaat
ggccttggcgtgcaatcttcgttagcaagaaaaagtccaatcggtagagcctccaagcat
cttggcccaccccctgggtttaactcagtcccctctaagctgcaaaaagagccagcacct
ggtccagatatgtctggccgcactctaccggctgatgattacagctggttggatggatac
caaggccagtctcaccaaggcactgctttcaacagttctttgaattacggttcttctggg
aagccagaacacgtgggtaccagcaatggactgaatgggcctgccaactttccgttccct
ggaaaacaagctccagcgtcacaggtcaaagcaaaatttccatactttcagcatcctaag
gaagataactttgtgaacggaaacgatcaatttactcaactcccccagcaatatccagga
catcccagttggtcgggtcatcgctttgtgtga
DBGET
integrated database retrieval system
