Brassica napus (rape): 106368359
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Entry
106368359 CDS
T04128
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X3
KO
K14328
regulator of nonsense transcripts 3
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106368359
03015 mRNA surveillance pathway
106368359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106368359
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106368359
mRNA cycle factors
P-body specific factors
106368359
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
106368359
NCBI-ProteinID:
XP_013663757
LinkDB
All DBs
Position
C5:complement(35060128..35063360)
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AA seq
490 aa
AA seq
DB search
MKDPSAKRKVVVRHLPPSLSQSDLLSQIDPRFGDRYNWVSFRPGKSSYKAQKYSRAYFSF
KAPEDVYDFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYLE
FLKLIAQPVENLPSAEIQLERREAEQSGASKPAPIVTPLMEFIRQKRATVIGSQQQGLDV
RRGSRRARAVSSNKPASRPSKRNSEKKKYVEKDNSKSVSRKATSDAGSSKQDYIPSGKDI
PVTETASVMDSSLPGIALTMDSGKKKILLLKKDRDNVMAFQNATTQPEQQMETNLSGSSL
TSRQDQKIVVGGRLIKGILLRNESRPSQPLSFVQPESRVEPLEAENSKRPPRPANSRAGK
DYQVSSTNSERQERRPRNKERPDRVVWTPLRRSDGSSISEDQLSSSTANNGEVKERMLLQ
RSGEVVNSSGGHSPENGSTRHSGRRVGARNRKEEGFAMTGEGKSSRRGGGGGGPSSHEKQ
MWIQKSSSGT
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgtcagcgaagaggaaggtggttgttcgccacttgcctccttctctttct
cagtccgatctcttatcccagatcgaccctcgtttcggtgatcgttacaattgggtttcc
tttcgtcctggaaagtccagttataaagctcagaagtattcacgggcctactttagtttc
aaggcacctgaagatgtttacgactttgctgcttttttcaacggccatgtgtttgttaat
gaaaagggtgctcagttcaaggccattgttgaatatgctccttcacagcgtgtgcccaaa
ccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgattatcttgag
tttcttaagcttattgctcagcctgttgagaatctccctagtgctgaaatccagttggaa
agaagagaagctgagcagtctggtgcttcaaaaccggctccaattgttacccctcttatg
gaattcatacgtcaaaaacgtgctactgtgattggatcccagcaacagggtttagatgtt
cgaagaggtagcagaagagccagggcagtctcttcaaacaagccagcttcaaggccctca
aaacgaaactctgaaaagaaaaagtatgtggaaaaagacaattcaaaaagcgtgtcacgg
aaggctacatcagacgccggcagctccaagcaagattacattccaagtggaaaggacata
ccagtaactgaaactgcctctgtcatggatagctctctcccagggattgcactgactatg
gattctgggaagaaaaagatcttgctcctgaaaaaagaccgagacaatgtaatggctttt
cagaacgctacaacacaaccagaacagcagatggaaactaatctttctggaagctccttg
acttcaagacaggatcagaagattgttgttggtgggaggttgatcaagggaatacttctg
agaaatgagtcgcgacctagtcagcccttatcttttgtccagccggagtcaagagtggaa
cccttggaagcagaaaactccaagcgtcctcctcggccagcaaactctcgagcagggaaa
gactatcaggtttctagtaccaacagtgagaggcaagagaggcgtccaagaaacaaggag
aggcctgatcgtgttgtgtggactcctcttcgtcgctctgatgggtccagtatcagcgag
gatcaactgtcatcttcaacagcaaacaatggagaagtgaaagaaaggatgttgttgcaa
agatctggagaagtggtgaactcctctggtggacactctcctgagaatggttctacaaga
cattctggtcgccgtgttggagcacgcaatagaaaagaggagggttttgcgatgactggt
gagggcaaatcatcccggagaggaggaggtggtggtggtcccagttcacatgagaagcaa
atgtggatccaaaaatcatcgtcgggtacttga
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